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fcb1e2f5

Commit fcb1e2f5 authored 9 years ago by Sander van der Zeeuw

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Merge remote-tracking branch 'origin/feature-VarscanIntoShiva' into feature-VarscanIntoShiva

parents 6073f6aa 30696cab

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public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/varscan/Varscan.scala 4 additions, 9 deletions

...cala/nl/lumc/sasc/biopet/extensions/varscan/Varscan.scala
public/biopet-extensions/src/main/scala/nl/lumc/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala 2 additions, 0 deletions

...c/sasc/biopet/extensions/varscan/VarscanMpileup2cns.scala
public/shiva/src/main/scala/nl/lumc/sasc/biopet/pipelines/shiva/variantcallers/VarscanCnsSingleSample.scala 1 addition, 1 deletion

...pelines/shiva/variantcallers/VarscanCnsSingleSample.scala
public/shiva/src/test/scala/nl/lumc/sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala 4 additions, 3 deletions

...sasc/biopet/pipelines/shiva/ShivaVariantcallingTest.scala

with 11 additions and 13 deletions

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