Commit 8afdecfc authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix compile issue

parent ae8146ba
......@@ -50,10 +50,10 @@ class CombineReads(val root: Configurable) extends QScript with SummaryQScript w
if ((forwardPrimers ::: reversePrimers).nonEmpty) {
val cutadapt = new Cutadapt(this)
cutadapt.fastq_input = flash.combinedFastq
cutadapt.fastq_output = this.combinedFastq
cutadapt.stats_output = swapExt(outputDir, cutadapt.fastq_output, ".fastq.gz", ".stats")
(forwardPrimers ::: reversePrimers).foreach(cutadapt.opt_anywhere += _)
cutadapt.fastqInput = flash.combinedFastq
cutadapt.fastqOutput = this.combinedFastq
cutadapt.statsOutput = swapExt(outputDir, cutadapt.fastqOutput, ".fastq.gz", ".stats")
(forwardPrimers ::: reversePrimers).foreach(cutadapt.anywhere += _)
add(cutadapt)
addSummarizable(cutadapt, "cutadapt")
}
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment