Commits · 4f6ea9751d58959faf74fb692a0f65f56bfbc9e2 · Mirrors / biopet.biopet

Aug 25, 2014
- Added single sample UnifiedGenotyper · 33b1e8fc
  Peter van 't Hof authored 10 years ago
  
  33b1e8fc
Aug 22, 2014
- Added allSitePLs option · f6bbd1b0
  Peter van 't Hof authored 10 years ago
  
  f6bbd1b0
Aug 20, 2014
- Added BamOutput Option to Haplotypecaller · 8e97fe15
  Peter van 't Hof authored 10 years ago
  
  8e97fe15
Aug 18, 2014
- Changed run to library · 7892b57c
  Peter van 't Hof authored 10 years ago
  
  7892b57c
- Removed the Gatk-Old from the pom.xml · eac4ec9e
  Peter van 't Hof authored 10 years ago
  
  eac4ec9e
- Fix bug on VariantEval -L option · 661c7456
  Peter van 't Hof authored 10 years ago
  
  661c7456
Aug 14, 2014
- Added targetBed option · d8056e3d
  Peter van 't Hof authored 10 years ago
  
  d8056e3d
- Added Vcf sample compare module · d94892dd
  Peter van 't Hof authored 10 years ago
  
  d94892dd
Aug 11, 2014
- Removed unused imports · 48524cb0
  Peter van 't Hof authored 10 years ago
  
  48524cb0
- Changed referenceFile to reference · b0cd998e
  Peter van 't Hof authored 10 years ago
  
  b0cd998e
Aug 08, 2014
- Remove unused imports · 2f24177f
  Peter van 't Hof authored 10 years ago
  
  2f24177f
Aug 07, 2014
- Remove metrics pipeline · 3a27231e
  Peter van 't Hof authored 10 years ago
  
  3a27231e
- test file · 28c39626
  Peter van 't Hof authored 10 years ago
  
  28c39626
Aug 04, 2014
- fix on test file · 8a242160
  Peter van 't Hof authored 10 years ago
  
  8a242160
Jul 29, 2014
- changed function to extensions · dd4f0175
  Peter van 't Hof authored 10 years ago
  
  dd4f0175
Jul 28, 2014
- Update scripts default location to follow Maven convention · 210c6b69
  bow authored 10 years ago
  
  210c6b69
Jul 23, 2014
- Update code style using scalariform · 02b571a4
  bow authored 10 years ago
  
  02b571a4
Jul 22, 2014
- Changes in config class · 6294de9f
  Peter van 't Hof authored 10 years ago
  
  6294de9f
Jul 21, 2014
- Changed path to Biopet · 385bfef9
  Peter van 't Hof authored 10 years ago
  
  385bfef9
- Added stand_call_conf and stand_emit_conf option · 7734a3c0
  Peter van 't Hof authored 10 years ago
  
  7734a3c0
- Added stand_call_conf and stand_emit_conf option · 9a25fc2b
  Peter van 't Hof authored 10 years ago
  
  9a25fc2b
- Collected all gatk pipelines/artifacts into 1 maven project · 2f47af7e
  Peter van 't Hof authored 10 years ago
  
  2f47af7e
- Collected all gatk pipelines/artifacts into 1 maven project · 79435a29
  Peter van 't Hof authored 10 years ago
  
  79435a29
Jul 18, 2014
- update for Queue/GATK 3.2-2 · 3b0a7242
  Peter van 't Hof authored 10 years ago
  
  3b0a7242
Jul 15, 2014
- Update to Queue/GATK 3.2 · 0a33b3d3
  Peter van 't Hof authored 10 years ago
  
  0a33b3d3
- Code style fix · d6a28af2
  Peter van 't Hof authored 10 years ago
  
  d6a28af2
Jul 03, 2014
- Indel realign is now intermediate · bb32c1aa
  Peter van 't Hof authored 10 years ago
  
  bb32c1aa
- Test file changes · b42ce554
  Peter van 't Hof authored 10 years ago
  
  b42ce554
- Added dependency for bam-metrics · 97cf8080
  Peter van 't Hof authored 10 years ago
  
  97cf8080
- Switched to biopet markduplicates · 9add492d
  Peter van 't Hof authored 10 years ago
  
  9add492d
Jun 26, 2014
- Added config report · 71a74799
  Peter van 't Hof authored 10 years ago
  
  71a74799
- Added stand_call_conf and stand_emit_conf as config option · 40c694ad
  Peter van 't Hof authored 10 years ago
  
  40c694ad
Jun 23, 2014
- pom changes for start of 0.1.3 · 9e9e6022
  Peter van 't Hof authored 10 years ago
  
  9e9e6022
- Thread options does not work anymore from QScript · b9325173
  Peter van 't Hof authored 10 years ago
  
  b9325173
- Changed constructors · ea4f80e1
  Peter van 't Hof authored 10 years ago
  
  ea4f80e1
Jun 21, 2014
- Config changed · c22acb87
  Peter van 't Hof authored 10 years ago
  
  c22acb87
Jun 19, 2014
- Readme changed to README.md · a33d9fd2
  Peter van 't Hof authored 10 years ago
  
  a33d9fd2
- Path to class for main class changed · 90e96f6c
  Peter van 't Hof authored 10 years ago
  
  90e96f6c
- Packaging changed, no scala compiler anymore in jar · 27de6356
  Peter van 't Hof authored 10 years ago
  
  27de6356
Jun 17, 2014
- version changes · f0705ac8
  Peter van 't Hof authored 10 years ago
  
  removing source files from jar packaging
  f0705ac8