Commit 3b0a7242 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

update for Queue/GATK 3.2-2

parent 044fe79f
......@@ -53,9 +53,9 @@
<version>0.1.3</version>
</dependency>
<dependency>
<groupId>org.broadinstitute.sting</groupId>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
<version>3.2</version>
<version>3.2-2</version>
</dependency>
</dependencies>
<build>
......@@ -117,7 +117,7 @@
</transformers>
<artifactSet>
<excludes>
<exclude>org.broadinstitute.sting:queue-package</exclude>
<exclude>org.broadinstitute.gatk:queue-package</exclude>
<exclude>junit:junit</exclude>
<exclude>org.scala-lang:scala-compiler</exclude>
<exclude>org.scala-lang:scala-library</exclude>
......
......@@ -22,7 +22,7 @@
<sting.unpack.phase>prepare-package</sting.unpack.phase>
<sting.shade.phase>package</sting.shade.phase>
<sting.binary-dist.name>SASC-Pipelines</sting.binary-dist.name>
<app.main.class>org.broadinstitute.sting.queue.QCommandLine</app.main.class>
<app.main.class>org.broadinstitute.gatk.queue.QCommandLine</app.main.class>
</properties>
<dependencies>
......@@ -50,9 +50,9 @@
<scope>test</scope>
</dependency>-->
<dependency>
<groupId>org.broadinstitute.sting</groupId>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
<version>3.2</version>
<version>3.2-2</version>
</dependency>
</dependencies>
<build>
......@@ -121,7 +121,7 @@
</includes>
</filter>
<filter>
<artifact>org.broadinstitute.sting:queue-package</artifact>
<artifact>org.broadinstitute.gatk:queue-package</artifact>
<excludes>
<!-- <exclude>scala/**</exclude>-->
</excludes>
......
......@@ -48,9 +48,9 @@
<version>0.1.3</version>
</dependency>
<dependency>
<groupId>org.broadinstitute.sting</groupId>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
<version>3.2</version>
<version>3.2-2</version>
</dependency>
</dependencies>
<build>
......@@ -112,7 +112,7 @@
</transformers>
<artifactSet>
<excludes>
<exclude>org.broadinstitute.sting:queue-package</exclude>
<exclude>org.broadinstitute.gatk:queue-package</exclude>
<exclude>junit:junit</exclude>
<exclude>org.scala-lang:scala-compiler</exclude>
<exclude>org.scala-lang:scala-library</exclude>
......
......@@ -48,9 +48,9 @@
<version>0.1.3</version>
</dependency>
<dependency>
<groupId>org.broadinstitute.sting</groupId>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
<version>3.2</version>
<version>3.2-2</version>
</dependency>
</dependencies>
<build>
......@@ -112,7 +112,7 @@
</transformers>
<artifactSet>
<excludes>
<exclude>org.broadinstitute.sting:queue-package</exclude>
<exclude>org.broadinstitute.gatk:queue-package</exclude>
<exclude>junit:junit</exclude>
<exclude>org.scala-lang:scala-compiler</exclude>
<exclude>org.scala-lang:scala-library</exclude>
......
......@@ -58,9 +58,9 @@
<version>0.1.3</version>
</dependency>
<dependency>
<groupId>org.broadinstitute.sting</groupId>
<groupId>org.broadinstitute.gatk</groupId>
<artifactId>queue-package</artifactId>
<version>3.2</version>
<version>3.2-2</version>
</dependency>
</dependencies>
<build>
......@@ -122,7 +122,7 @@
</transformers>
<artifactSet>
<excludes>
<exclude>org.broadinstitute.sting:queue-package</exclude>
<exclude>org.broadinstitute.gatk:queue-package</exclude>
<exclude>junit:junit</exclude>
<exclude>org.scala-lang:scala-compiler</exclude>
<exclude>org.scala-lang:scala-library</exclude>
......
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