Commit bb32c1aa authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Indel realign is now intermediate

parent b42ce554
......@@ -109,6 +109,7 @@ class Gatk(val root:Configurable) extends QScript with MultiSampleQScript {
this.jobResourceRequests :+= "h_vmem=5G"
if (configContains("scattercount", "realignertargetcreator")) this.scatterCount = config("scattercount", 1, "realignertargetcreator")
realignerTargetCreator.isIntermediate = true
val indelRealigner = new IndelRealigner with gatkArguments {
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