Commit f6bbd1b0 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added allSitePLs option

parent f66115cc
......@@ -131,7 +131,9 @@ class GatkVariantcalling(val root: Configurable) extends QScript with BiopetQScr
logger.warn("BamOutput is on, nct/threads is forced to set on 1, this option is only for debug")
this.memoryLimit = this.nct * 2
if (configContains("allSitePLs")) this.allSitePLs = config("allSitePLs")
// GVCF options
if (gvcfMode) {
this.emitRefConfidence =
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment