Commits · 1f1315c596fa3d723771e7ebbea418db0bf981f0 · Mirrors / biopet.biopet · GitLab

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Nov 11, 2015
- Added more to the release notes · 1f1315c5
  Peter van 't Hof authored Nov 11, 2015
  
  1f1315c5
- Moved release notes to new folder · f6116a57
  Peter van 't Hof authored Nov 11, 2015
  
  f6116a57
Nov 10, 2015
- unify biopet invocation command from java -jar <biopet.jar> to `biopet` · bbc08fd5
  Wai Yi Leung authored Nov 10, 2015
  
  bbc08fd5
- Adding mock gears · 568b6579
  Wai Yi Leung authored Nov 10, 2015
  
  568b6579
- Update some content · 5e274379
  Peter van 't Hof authored Nov 10, 2015
  
  5e274379
Nov 06, 2015
- changes in docs 0.5.0 bam2wig reformat code · f3ebafca
  Sander van der Zeeuw authored Nov 6, 2015
  
  f3ebafca
- changes in docs 0.5.0 added getting help section · 30fd4225
  Sander van der Zeeuw authored Nov 6, 2015
  
  30fd4225
Nov 05, 2015
- changes in docs 0.5.0 carp · fcd35967
  Sander van der Zeeuw authored Nov 5, 2015
  
  fcd35967
- Merge remote-tracking branch 'origin/feature-docs-0.5.0' into feature-docs-0.5.0 · 2e1700d7
  Sander van der Zeeuw authored Nov 5, 2015
  
  2e1700d7
- changes in docs 0.5.0 carp · 11f7c34b
  Sander van der Zeeuw authored Nov 5, 2015
  
  11f7c34b
- Added small key work to menu · 0f9dbdbe
  Peter van 't Hof authored Nov 5, 2015
  
  0f9dbdbe
- changes in docs 0.5.0 · a04d1ce0
  Sander van der Zeeuw authored Nov 5, 2015
  
  a04d1ce0
Oct 29, 2015
- Version cleanup, point all to version 0.5.0 · 839c80aa
  Wai Yi Leung authored Oct 29, 2015
  
  839c80aa
Oct 27, 2015
- Quick fix, error in the HelloPipeline · d6142527
  Wai Yi Leung authored Oct 27, 2015
  
  d6142527
- Merge remote-tracking branch 'origin/feature-docs-0.5.0' into feature-docs-0.5.0 · 593c0f57
  Wai Yi Leung authored Oct 27, 2015
  
  593c0f57
- An update on example pipeline · 787d0c99
  Wai Yi Leung authored Oct 27, 2015
  
  787d0c99
Oct 23, 2015
- add extra newline · 495cd895
  Sander van der Zeeuw authored Oct 23, 2015
  
  495cd895
Oct 22, 2015
- Typos and reformulating sentences · a087ca24
  Sander van der Zeeuw authored Oct 22, 2015
  
  a087ca24
- added release notes · a3907a6f
  Sander van der Zeeuw authored Oct 22, 2015
  
  a3907a6f
Oct 21, 2015
- Merge branch 'develop' of git.lumc.nl:biopet/biopet into feature-docs-0.5.0 · 04c040d2
  Wai Yi Leung authored Oct 21, 2015
  
  04c040d2
- Merge branch 'fix-typo-toolcommandfuntion' into 'develop' · 911948ed
  Peter van 't Hof authored Oct 21, 2015
  911948ed
- Adding examples for developers creating pipeline, tool, wrapper and reports. · 7f5d8873
  Wai Yi Leung authored Oct 21, 2015
  7f5d8873
- Fix typo of trait class ToolCommandFuntion -> ToolCommandFunction #221 · 6e7eeb41
  Wai Yi Leung authored Oct 21, 2015
  
  6e7eeb41
- Merge branch 'fix-flexiprep_noext' into 'develop' · 7d751299
  Sander Bollen authored Oct 21, 2015
  7d751299
Oct 20, 2015
- Merge branch 'feature-sample_name_check' into 'develop' · f535473f
  Sander Bollen authored Oct 20, 2015
  f535473f
- Changed error message · 0832f655
  Peter van 't Hof authored Oct 20, 2015
  
  0832f655
- change regex · bf1d0b71
  Peter van 't Hof authored Oct 20, 2015
  
  bf1d0b71
- Moved function to utils, this might be usefull in other pipelines · 954e0245
  Peter van 't Hof authored Oct 20, 2015
  
  954e0245
- Merge branch 'fix-versions' into 'develop' · 2e285818
  Sander Bollen authored Oct 20, 2015
  2e285818
Oct 19, 2015
- Use provided exts Set instead of zipExtensions · 6af00416
  bow authored Oct 19, 2015
  
  6af00416
- Remove R1_ext and R2_ext from Flexiprep · 90eaaf09
  bow authored Oct 19, 2015
  
  90eaaf09
- Add error message when a Flexiprep input file does not have the expected structure · 487324b4
  bow authored Oct 19, 2015
  
  487324b4
- Refactor filename and extension retrieval in Flexiprep · b4b6785a
  bow authored Oct 19, 2015
  
  b4b6785a
Oct 16, 2015
- Merge branch 'fix-memory_test_threads' into 'develop' · dafecf89
  Sander van der Zeeuw authored Oct 16, 2015
  dafecf89
- Limit memory for each test thread · 11579c5d
  Peter van 't Hof authored Oct 16, 2015
  
  11579c5d
- Style fix · c6ebdcae
  Peter van 't Hof authored Oct 16, 2015
  
  c6ebdcae
- Merge branch 'feature-parralel_mapping_tests' into 'develop' · aec67d97
  bow authored Oct 16, 2015
  aec67d97
- Merge branch 'feature-dev_docs' into feature-docs-0.5.0 · 2d9184ce
  Peter van 't Hof authored Oct 16, 2015
  
  2d9184ce
- Merge branch 'develop' into feature-docs-0.5.0 · d167539f
  Peter van 't Hof authored Oct 16, 2015
  
  d167539f
- Merge remote-tracking branch 'remotes/origin/fix-mapping' into feature-parralel_mapping_tests · 25cc88c4
  Peter van 't Hof authored Oct 16, 2015
  
  25cc88c4