Skip to content
Snippets Groups Projects
Commit d6142527 authored by Wai Yi Leung's avatar Wai Yi Leung
Browse files

Quick fix, error in the HelloPipeline

parent 593c0f57
No related branches found
No related tags found
No related merge requests found
package nl.lumc.sasc.biopet/pipelines.mypipeline
package nl.lumc.sasc.biopet.pipelines.mypipeline
import nl.lumc.sasc.biopet.core.PipelineCommand
import nl.lumc.sasc.biopet.core.summary.SummaryQScript
......@@ -29,10 +29,8 @@ class HelloPipeline(val root: Configurable) extends QScript with SummaryQScript
val fastqc = new Fastqc(this)
fastqc.fastqfile = config("fastqc_input")
fastqc.output = new File(outputDir,
/* Only required when using [[SummaryQScript]] */
addSummaryQScript(shiva)
fastqc.output = new File(outputDir, "fastqc.txt")
add(fastqc)
// From here you can use the output files of shiva as input file of other jobs
}
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment