Commits · 18e22c1b54337b6510091792deb48fc8e3bd18d0 · Mirrors / biopet.biopet

Oct 23, 2015
- Added GenotypeConcordance to shiva · 18e22c1b
  Peter van 't Hof authored 9 years ago
  
  18e22c1b
Oct 21, 2015
- Change to compressed output · 46f8b1b5
  Peter van 't Hof authored 9 years ago
  
  46f8b1b5
- Fix sample and library flag · 43a4bc76
  Peter van 't Hof authored 9 years ago
  
  43a4bc76
- changed imports · 0d010c88
  Sander van der Zeeuw authored 9 years ago
  
  0d010c88
Oct 20, 2015
- added bcftools singlesample to the test of public · 025740f5
  Sander van der Zeeuw authored 9 years ago
  
  025740f5
Oct 19, 2015
- added dependency for combinevariants · f17e2175
  Sander van der Zeeuw authored 9 years ago
  
  f17e2175
Oct 16, 2015
- add bcf merge to shiva and create wrapper · 34024cc5
  Sander van der Zeeuw authored 9 years ago
  
  34024cc5
- added tabix to bcftools output · f1599432
  Sander van der Zeeuw authored 9 years ago
  
  f1599432
Oct 15, 2015
- added proper piping to bcftools and mpileup. [GENTRAP VARSCAN SHOULD BE TESTED] · 76da8883
  Sander van der Zeeuw authored 9 years ago
  
  76da8883
- Remove "reference" from testing · f4fb8907
  Peter van 't Hof authored 9 years ago
  f4fb8907
- Remove "reference" from testing · 8bf162ad
  Peter van 't Hof authored 9 years ago
  
  8bf162ad
- added bcftools_singlesample · 695ef882
  Sander van der Zeeuw authored 9 years ago
  
  695ef882
Oct 12, 2015
- mpileup_reference_added · a6e9c469
  Sander van der Zeeuw authored 9 years ago
  
  a6e9c469
Oct 05, 2015
- Removed out commented tests · b733ff34
  Peter van 't Hof authored 9 years ago
  
  b733ff34
Sep 23, 2015
- Remove count tests · 839b0c12
  Peter van 't Hof authored 9 years ago
  
  839b0c12
Sep 18, 2015
- Fixed unit tests · 6c7f4701
  Peter van 't Hof authored 9 years ago
  
  6c7f4701
- Fixed case class · bd6eae2c
  Peter van 't Hof authored 9 years ago
  
  bd6eae2c
- Disable default toucan · 76488b88
  Peter van 't Hof authored 9 years ago
  
  76488b88
- Adding input files to check · 3c83721a
  Peter van 't Hof authored 9 years ago
  
  3c83721a
Sep 13, 2015
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored 9 years ago
  
  f3343df9
- Rscript usable without core now · 7d112c68
  Peter van 't Hof authored 9 years ago
  
  7d112c68
Sep 11, 2015
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored 9 years ago
  
  eb97957f
Sep 10, 2015
- Moved config to utils · a81bce67
  Peter van 't Hof authored 9 years ago
  
  a81bce67
Sep 04, 2015
- Remove the need of merging the defaults anymore · 0586cbc2
  Peter van 't Hof authored 9 years ago
  
  0586cbc2
- Changing to SNAPSHOT version, this is following the maven convention · f550b637
  Peter van 't Hof authored 9 years ago
  
  f550b637
Aug 01, 2015
- Fix unit test · d05d08f9
  Peter van 't Hof authored 9 years ago
  
  d05d08f9
- Adding toucan to shiva · 8e606123
  Peter van 't Hof authored 9 years ago
  
  8e606123
- Saver execution order · 3584a778
  Peter van 't Hof authored 9 years ago
  
  3584a778
Jul 30, 2015
- Bumb version to 0.5.0-DEV · c3b83b90
  Peter van 't Hof authored 9 years ago
  
  c3b83b90
- Bumb version to 0.4.0 · 6186881d
  Peter van 't Hof authored 9 years ago
  
  6186881d
Jul 28, 2015
- Bumb version to 0.4.0-RC2 · d5834cba
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC2 v0.4.0-RC2
  
  d5834cba
Jul 27, 2015
- Bumb version 0.4.0-RC1 · 5224df5b
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC1 v0.4.0-RC1
  
  5224df5b
- Adding license · bcc9debe
  Peter van 't Hof authored 9 years ago
  
  bcc9debe
- General update for clever · 05a50457
  Peter van 't Hof authored 9 years ago
  
  05a50457
- Fixed delly output file names · aa53de21
  Peter van 't Hof authored 9 years ago
  
  aa53de21
- Fixed typo · 4550f9b0
  Peter van 't Hof authored 9 years ago
  
  4550f9b0
- Fix config error · 3c8c6fa3
  Peter van 't Hof authored 9 years ago
  
  3c8c6fa3
- Adding sv jobs · 2d4ea4b7
  Peter van 't Hof authored 9 years ago
  
  2d4ea4b7
- Added sv calling to shiva · 844ff098
  Peter van 't Hof authored 9 years ago
  
  844ff098
- Fix add method · 9ca827e9
  Peter van 't Hof authored 9 years ago
  
  9ca827e9