Commit 43a4bc76 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix sample and library flag

parent 0d010c88
......@@ -198,8 +198,8 @@ trait ShivaTrait extends MultiSampleQScript with SummaryQScript with Reference {
})
variantcalling.foreach(vc => {
vc.sampleId = Some(libId)
vc.libId = Some(sampleId)
vc.sampleId = Some(sampleId)
vc.libId = Some(libId)
vc.outputDir = new File(libDir, "variantcalling")
if (preProcessBam.isDefined) vc.inputBams = preProcessBam.get :: Nil
else vc.inputBams = bamFile.get :: Nil
......
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