Commit d05d08f9 authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix unit test

parent 7f682612
......@@ -107,6 +107,9 @@ object ShivaTest {
val config = Map(
"name_prefix" -> "test",
"cache" -> true,
"dir" -> "test",
"vep_script" -> "test",
"output_dir" -> outputDir,
"reference" -> (outputDir + File.separator + "ref.fa"),
"reference_fasta" -> (outputDir + File.separator + "ref.fa"),
......
......@@ -122,6 +122,9 @@ object ShivaVariantcallingTest {
val config = Map(
"name_prefix" -> "test",
"output_dir" -> outputDir,
"cache" -> true,
"dir" -> "test",
"vep_script" -> "test",
"reference" -> (outputDir + File.separator + "ref.fa"),
"reference_fasta" -> (outputDir + File.separator + "ref.fa"),
"gatk_jar" -> "test",
......
......@@ -103,6 +103,9 @@ object ShivaTest {
val config = Map(
"name_prefix" -> "test",
"output_dir" -> outputDir,
"cache" -> true,
"dir" -> "test",
"vep_script" -> "test",
"reference" -> (outputDir + File.separator + "ref.fa"),
"reference_fasta" -> (outputDir + File.separator + "ref.fa"),
"gatk_jar" -> "test",
......
......@@ -103,6 +103,9 @@ object ShivaVariantcallingTest {
val config = Map(
"name_prefix" -> "test",
"output_dir" -> outputDir,
"cache" -> true,
"dir" -> "test",
"vep_script" -> "test",
"reference" -> (outputDir + File.separator + "ref.fa"),
"reference_fasta" -> (outputDir + File.separator + "ref.fa"),
"gatk_jar" -> "test",
......
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