Commits · 0c3deab936368bd03eb51ec61b1f661469d020d0 · Mirrors / biopet.biopet

Feb 16, 2015
- Added summary framework to mapping and flexiprep · 0c3deab9
  Peter van 't Hof authored 10 years ago
  
  0c3deab9
- Fix memory issues · 2952190e
  Peter van 't Hof authored 10 years ago
  
  2952190e
- Added qscripts to final output file · 6075c248
  Peter van 't Hof authored 10 years ago
  
  6075c248
- Added qscript wide summary jobs · ebe2bb5f
  Peter van 't Hof authored 10 years ago
  
  ebe2bb5f
- Remove unused apply methods · 1c1ac1f0
  Peter van 't Hof authored 10 years ago
  
  1c1ac1f0
- Fix outputDirs · e42e39c6
  Peter van 't Hof authored 10 years ago
  
  e42e39c6
- Added default vmem and add log.file as output file · 1865f3b0
  Peter van 't Hof authored 10 years ago
  
  1865f3b0
- Fix on index ln methods · d125c2f3
  Peter van 't Hof authored 10 years ago
  
  d125c2f3
- Fix output dirs · d8464ae3
  Peter van 't Hof authored 10 years ago
  
  d8464ae3
- Remove obselete apply methods · 862aefe3
  Peter van 't Hof authored 10 years ago
  
  862aefe3
- Fix outputDirs · 7f1ff523
  Peter van 't Hof authored 10 years ago
  
  7f1ff523
- Added SampleLibraryTag · 28b42baf
  Peter van 't Hof authored 10 years ago
  
  28b42baf
- First version of write function · 38194b88
  Peter van 't Hof authored 10 years ago
  
  38194b88
- Rename Stats to Data · 982c0460
  Peter van 't Hof authored 10 years ago
  
  982c0460
- Added checksum cache · ee197cc6
  Peter van 't Hof authored 10 years ago
  
  ee197cc6
Feb 14, 2015
- Added init version of summary · e8f474c1
  Peter van 't Hof authored 10 years ago
  
  e8f474c1
- Added resolveConflict option to mergeMaps · d04c7f03
  Peter van 't Hof authored 10 years ago
  
  d04c7f03
- Added missing executables · 2afb277b
  Peter van 't Hof authored 10 years ago
  
  2afb277b
- Remove .exist, does not work on dry run · 55816a48
  Peter van 't Hof authored 10 years ago
  
  55816a48
- Fix outputDirs · 7b8a06ed
  Peter van 't Hof authored 10 years ago
  
  7b8a06ed
- Fix dependencies · 1926c8f8
  Peter van 't Hof authored 10 years ago
  
  1926c8f8
Feb 13, 2015
- Fix output dirs · d5b3661d
  Peter van 't Hof authored 10 years ago
  
  d5b3661d
- Set default vmem to 5G · 6d4fa4c5
  Peter van 't Hof authored 10 years ago
  
  6d4fa4c5
- Add job check to unit tests · b7c5a56c
  Peter van 't Hof authored 10 years ago
  
  b7c5a56c
- remove timestamp · 3152e5fc
  Peter van 't Hof authored 10 years ago
  
  3152e5fc
- Remove unused imports · b5f82222
  Peter van 't Hof authored 10 years ago
  
  b5f82222
- Intial unit test for Carp · 4b011fa8
  Peter van 't Hof authored 10 years ago
  
  4b011fa8
- Added default aligner · 3e1bc47a
  Peter van 't Hof authored 10 years ago
  
  3e1bc47a
- Added test log4j.properties · 64397750
  Peter van 't Hof authored 10 years ago
  
  64397750
Feb 12, 2015
- Convert flexiprep testing to DataProvider · af04710a
  Peter van 't Hof authored 10 years ago
  
  af04710a
- Added star-2pass and stampy to data provider, not having 192 unit tests · 62308c50
  Peter van 't Hof authored 10 years ago
  
  62308c50
- Fix some config values · d70e8930
  Peter van 't Hof authored 10 years ago
  
  d70e8930
- Added 128 unit tests to mapping pipeline · 36641e26
  Peter van 't Hof authored 10 years ago
  
  36641e26
- Fix typos · 953e054c
  Peter van 't Hof authored 10 years ago
  
  953e054c
- Fix "/" format errors · dd6abc7e
  Peter van 't Hof authored 10 years ago
  
  dd6abc7e
- Make reference absolute · a93c9319
  Peter van 't Hof authored 10 years ago
  
  a93c9319
- Make outputDir always absolute · eb5f9327
  Peter van 't Hof authored 10 years ago
  
  eb5f9327
- Added asFile · ee91149d
  Peter van 't Hof authored 10 years ago
  
  ee91149d
- Fix typo · 4eb715d8
  Peter van 't Hof authored 10 years ago
  
  4eb715d8
- Format fix · aa9b9602
  Peter van 't Hof authored 10 years ago
  
  aa9b9602