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Commit a93c9319 authored by Peter van 't Hof's avatar Peter van 't Hof
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Make reference absolute

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public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Star.scala
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......@@ -54,7 +54,7 @@ class Star(val root: Configurable) extends BiopetCommandLineFunction {
@Argument(doc = "Output Directory")
var outputDir: File = _
var genomeDir: File = config("genomeDir", new File(reference.getParent, "/star"))
var genomeDir: File = config("genomeDir", new File(reference.getAbsoluteFile.getParent, "star"))
var runmode: String = _
var sjdbOverhang: Int = _
var outFileNamePrefix: String = _
......
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