Commit 3e1bc47a authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Added default aligner

parent 64397750
......@@ -38,7 +38,7 @@ class Carp(val root: Configurable) extends QScript with MultiSampleQScript {
def this() = this(null)
override def defaults = ConfigUtils.mergeMaps(Map(
"mapping" -> Map("skip_markduplicates" -> true)
"mapping" -> Map("skip_markduplicates" -> true, "aligner" -> "bwa")
), super.defaults)
def makeSample(id: String) = new Sample(id)
......
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