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biopet.biopet
Commits
862aefe3
Commit
862aefe3
authored
Feb 16, 2015
by
Peter van 't Hof
Browse files
Remove obselete apply methods
parent
1062e3ab
Changes
1
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Inline
Side-by-side
public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/BiopetFlagstat.scala
View file @
862aefe3
...
...
@@ -46,12 +46,6 @@ object BiopetFlagstat extends ToolCommand {
flagstat
.
output
=
output
return
flagstat
}
def
apply
(
root
:
Configurable
,
input
:
File
,
outputDir
:
String
)
:
BiopetFlagstat
=
{
val
flagstat
=
new
BiopetFlagstat
(
root
)
flagstat
.
input
=
input
flagstat
.
output
=
new
File
(
outputDir
,
input
.
getName
.
stripSuffix
(
".bam"
)
+
".biopetflagstat"
)
return
flagstat
}
case
class
Args
(
inputFile
:
File
=
null
,
region
:
Option
[
String
]
=
None
)
extends
AbstractArgs
...
...
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