Commits · a191f5816bf8a6cedd76bc0384be99904d77b11e · Klinische Genetica / capture-lumc / hutspot

26 Feb, 2018 13 commits
- write seqtk as bash script · a191f581
  Sander Bollen authored Feb 26, 2018
  
  a191f581
- vcfstats via vtools · 9256dcbf
  Sander Bollen authored Feb 26, 2018
  
  9256dcbf
- remove extraneous backslashes · b4a6ad0e
  Sander Bollen authored Feb 26, 2018
  
  b4a6ad0e
- remove extraneous import · 73040388
  Sander Bollen authored Feb 26, 2018
  
  73040388
- fastqc output zip files · 1a7b7f7e
  Sander Bollen authored Feb 26, 2018
  
  1a7b7f7e
- mark tmp dir as ancient for markdup · 3c4c90f4
  Sander Bollen authored Feb 26, 2018
  
  3c4c90f4
- all rules with docstrings · 5e129da5
  Sander Bollen authored Feb 26, 2018
  
  5e129da5
- rework input functions · bf0c7752
  Sander Bollen authored Feb 26, 2018
  
  bf0c7752
- some docs on split_genome · ed71984b
  Sander Bollen authored Feb 26, 2018
  
  ed71984b
- use srcdir in stead of repeated joins · 09583c2a
  Sander Bollen authored Feb 26, 2018
  
  09583c2a
- shorten if statement · aeb6fb29
  Sander Bollen authored Feb 26, 2018
  
  aeb6fb29
- remove prefixes from conda envs · ba6326e9
  Sander Bollen authored Feb 26, 2018
  
  ba6326e9
- Fix typos in README · f6db48a6
  Sander Bollen authored Feb 26, 2018
  
  f6db48a6
15 Feb, 2018 4 commits
- Chunks may have quirky names. · 5f9751a9
  Sander Bollen authored Feb 15, 2018
```
Wrap in quotes to prevent shell oddities.
```
  5f9751a9
- Chunks may have quirky names. · 6c15de9c
  Sander Bollen authored Feb 15, 2018
```
Wrap in quotes to prevent shell oddities.
```
  6c15de9c
- remove wheel build numbers for bwa · 31e421af
  Sander Bollen authored Feb 15, 2018
  
  31e421af
- remove wheel build numbers · c3f3fb76
  Sander Bollen authored Feb 15, 2018
  
  c3f3fb76
19 Jan, 2018 2 commits
- add schema for stats · 0f0eadd0
  Sander Bollen authored Jan 19, 2018
  
  0f0eadd0
- remove printreads step · b64f19fc
  Sander Bollen authored Jan 19, 2018
  
  b64f19fc
30 Nov, 2017 6 commits
- summing up · 407e595e
  Bollen authored Nov 30, 2017
  
  407e595e
- cluster configuration · f55918f0
  Bollen authored Nov 30, 2017
  
  f55918f0
- confguration values descriptions · e08b455c
  Bollen authored Nov 30, 2017
  
  e08b455c
- formula fix · 3f59deba
  Bollen authored Nov 30, 2017
  
  3f59deba
- Use python drop-in replacement in case FASTQ_COUNT conig value is not supplied · ad06f674
  Bollen authored Nov 30, 2017
  
  ad06f674
- drop-in replacement for fastq-count · 34268578
  Sander Bollen authored Nov 30, 2017
  
  34268578
29 Nov, 2017 11 commits
- fixed mapped basenum · 6b977d69
  Sander Bollen authored Nov 29, 2017
  
  6b977d69
- fix collectstats argument · ad49bd4f
  Sander Bollen authored Nov 29, 2017
  
  ad49bd4f
- add rulegraph image · 606d41b6
  Sander Bollen authored Nov 29, 2017
  
  606d41b6
- graph · dec8818b
  Sander Bollen authored Nov 29, 2017
  
  dec8818b
- installation and requirements · 9760cd58
  Sander Bollen authored Nov 29, 2017
  
  9760cd58
- features in readme · b853933e
  Sander Bollen authored Nov 29, 2017
  
  b853933e
- horizontal graph · e91c2fd8
  Sander Bollen authored Nov 29, 2017
  
  e91c2fd8
- rulegraph in readme · 92dd372c
  Sander Bollen authored Nov 29, 2017
  
  92dd372c
- add example config and schema · 57d068c7
  Sander Bollen authored Nov 29, 2017
  
  57d068c7
- remove extraneous config val · fbf97659
  Sander Bollen authored Nov 29, 2017
  
  fbf97659
- collectstats should be an argument in mergestats · 2a93a74f
  Sander Bollen authored Nov 29, 2017
  
  2a93a74f
28 Nov, 2017 4 commits
- print seqtk command · 62cdd43b
  Sander Bollen authored Nov 28, 2017
  
  62cdd43b
- fix collectstats · 00907053
  Sander Bollen authored Nov 28, 2017
  
  00907053
- fix postq arg · 6d8f168c
  Sander Bollen authored Nov 28, 2017
  
  6d8f168c
- fix sample_name argument · d05afdec
  Sander Bollen authored Nov 28, 2017
  
  d05afdec