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Commit 6d8f168c authored by Sander Bollen's avatar Sander Bollen
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fix postq arg

parent d05afdec
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......@@ -463,7 +463,7 @@ rule collectstats:
out_path("{sample}/{sample}.stats.json")
conda: "envs/collectstats.yml"
shell: "python {input.colpy} --sample-name {params.sample_name} " \
"--pre-qc-fastq {input.preqc} --post-qc-fastq {input.postqc} " \
"--pre-qc-fastq {input.preqc} --post-qc-fastq {input.postq} " \
"--mapped-num {input.mnum} --mapped-basenum {input.mbnum} " \
"--unique-num {input.unum} --unique-basenum {input.mbnum} " \
"--female-threshold {params.fthresh} {input.cov} > {output}"
......
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