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Commit ad49bd4f authored by Sander Bollen's avatar Sander Bollen
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fix collectstats argument

parent 606d41b6
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......@@ -464,7 +464,7 @@ rule collectstats:
shell: "python {input.colpy} --sample-name {params.sample_name} " \
"--pre-qc-fastq {input.preqc} --post-qc-fastq {input.postq} " \
"--mapped-num {input.mnum} --mapped-basenum {input.mbnum} " \
"--unique-num {input.unum} --usable-basenum {input.mbnum} " \
"--unique-num {input.unum} --usable-basenum {input.ubnum} " \
"--female-threshold {params.fthresh} {input.cov} > {output}"
rule merge_stats:
......
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