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Commit f6db48a6 authored by Sander Bollen's avatar Sander Bollen
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Fix typos in README

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......@@ -5,7 +5,7 @@ GATK HaplotypeCaller.
## Features
* Any number of samples is supported
* Whole-genome calling, regardless of sample protocol used.
* Whole-genome calling, regardless of wet-lab library preparation.
* Follows modern best practices
* Each sample is individually called as as a GVCF.
* A multisample VCF is then produced by genotyping the collection of GVCFs.
......@@ -115,7 +115,7 @@ The following configuration values are **required**:
| ------------- | ----------- |
| `OUT_DIR` | Absolute path to output directory |
| `REFERENCE` | Absolute path to fasta file |
| `SAMPLE_CONFIG` | Path to config file as descrbed above |
| `SAMPLE_CONFIG` | Path to config file as described above |
| `GATK` | Path to GATK jar. **Must** be version 3.7 |
| `DBSNP` | Path to dbSNP VCF |
| `ONETHOUSAND` | Path to 1000Genomes VCF |
......@@ -188,7 +188,7 @@ more complex, as nearly all rules are duplicated by sample and some
(the scatter jobs) additionally by chunk.
As a rough estimate of the total number of jobs in pipeline you can use
the followig formula:
the following formula:
```math
jobs = 4+(21*n_{samples})+(1*n_{samples}*n_{beds})+(1*n_{samples}*n_{chunks})+(1*n_{chunks})
......
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