Explore projects
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Mirrors / LOVD3
GNU General Public License v3.0 or laterMirror of https://github.com/LOVDnl/LOVD3.git
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courses / Git course
Creative Commons Attribution 4.0 InternationalWebsite and materials for our Git courses
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Sam Nooij / metagenomics-preprocessing
BSD 2-Clause "Simplified" LicenseA Snakemake workflow to automatically handle metagenomics preprocessing (i.e. host removal and low-quality trimming).
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pongs / pongs-translation
MIT LicenseCode and tables for translation from variants to haplotypes.
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Pipeline to pre-process vcf and gvcf files and submit them to varda.lumc.nl
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hem / hamlet
MIT LicenseRNA-seq pipeline for AML diagnostics. Illustration from Anatomy & Physiology, licenced under the Creative Commons Attribution 3.0 Unported
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This was the temporary repository in which the published version of PAROS was created and this repository was temporarily made visible during the peer review process.
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This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.
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This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.
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Sam Nooij / rCDI resistome and MDRO analyses
BSD 3-Clause "New" or "Revised" LicenseAnalyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms
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Klinische Genetica / capture-lumc / hutspot
GNU Affero General Public License v3.0Snakemake-based WES/IDP pipeline for LDGA.
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