Explore projects

Supporting material for our programming course

Mirror of https://github.com/LOVDnl/LOVD3.git

LacyTools with some fixes

Website and materials for our Git courses

Automated and parallelised workflow to assemble PacBio HiFi reads of bacteria whole-genome sequencing. Also subsamples reads before assembly and re-orients resulting contigs to the 'correct' starting position.

Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms

Mirror of https://github.com/mutalyzer/backtranslate.git

Engraftment calculations based on One Codex species-level taxonomic classifications of shotgun metagenomic read sets of the FECBUD trial - a collaboration between the Netherlands Donor Feces Bank and Vedanta Biosciences.

This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.

A collection of semi-reusable scripts, which are not part of any official toolchain

A collection of reusable WDL tasks. Category:Other

Mirror of https://github.com/LUMC/mutalyzer.git