Explore projects

This repository gather all genomics data and analysis we performed on Zbtb24 in mouse embryonic stem cells.

Practica files for the workshop

Public repository containing the code for the open source WebGL viewer based on BabylonJS

Interactive Volcano Plots

Various tools operating over VCF files. Uses cyvcf2 and cython under the hood for speed

Example interactive visualizations using Jupyter and Bokeh

Mutalyzer DNA Visualisation

Python package for performing grid-based verification of BIOS files.

Pipeline to pre-process vcf and gvcf files and submit them to varda.lumc.nl

varscan module for GENTRAP

A database for genomic variation frequencies

This project is a fork of https://github.com/varda/varda.git

Project NGS code with Van der Weegen et al; ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation; NCB 2021