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This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.
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Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses.
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Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses
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Repository containing the script required to reproduce the figure 5 and supplementary figures related to snRNA-seq in cerebrum E14.5
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Generate metagenome-assembled genomes of Ruminococcus gnavus from recurrent Clostridioides difficile infected patient metagenomes
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Use Kraken2 to quickly classify metagenomic reads and extract reads of taxa of interest to then assemble metagenomic assembled genomes (MAGs)
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Functional metagenomics analysis using the HUMAnN tool version 3
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Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms
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Microbiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial
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