This is the user guide for the Shark CentOS-8 Slurm-20.02 cluster. This will give the user a short introduction to the cluster and how to use it.

Simple RF coil field simulations implemented in Julia

Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses.

test

Code used to prepare disease data in survival format, calculate LRC score, data QC and preparation, and data analyses

Repository containing the script required to reproduce the figure 5 and supplementary figures related to snRNA-seq in cerebrum E14.5

Generate metagenome-assembled genomes of Ruminococcus gnavus from recurrent Clostridioides difficile infected patient metagenomes

Use Kraken2 to quickly classify metagenomic reads and extract reads of taxa of interest to then assemble metagenomic assembled genomes (MAGs)

Functional metagenomics analysis using the HUMAnN tool version 3

Analyses of antimicrobial resistance genes in metagenomic data from patients with (multiple) recurrent Clostridioides difficile infections and their faecal microbiota transplantation donors - with culture data from multidrug resistant organisms

Microbiota analyses of metagenomic samples of ulcerative colitis patients and fecal microbiota transplantation donors in the FECBUD trial