Commits · 8c7f99782bdbf49fa8d60bc704b7eff43f310f9a · biowdl / tasks

Jun 30, 2021
- Merge remote-tracking branch 'origin/develop' into update_CPAT · 8c7f9978
  Cats authored 3 years ago
  
  8c7f9978
- update CPAT to 3.0.4 · 47c89884
  Cats authored 3 years ago
  
  47c89884
Jun 28, 2021
- Merge pull request #284 from biowdl/task_issue_281 · c1a647aa
  Cedrick Agaser authored 3 years ago
  
  Task issue 281
  c1a647aa
- update CHANGELOG · da28f939
  cagaser authored 3 years ago
  
  da28f939
- survivor: line 47-49, change integer to string literal · 2ebde5f0
  cagaser authored 3 years ago
  
  2ebde5f0
Jun 15, 2021
- Merge pull request #280 from biowdl/PACBIO · c210b6cf
  Jasper authored 3 years ago
  
  Try to adjust localization.
  c210b6cf
- Add directory creation to samtools fastq. · f2f7411a
  JasperBoom authored 3 years ago
  
  f2f7411a
- Revert changes to WDL file. · 235fb43f
  JasperBoom authored 3 years ago
  
  235fb43f
Jun 14, 2021
- Try another approach. · 734c4037
  JasperBoom authored 3 years ago
  
  734c4037
- Fix array. · adee85e2
  JasperBoom authored 3 years ago
  
  adee85e2
- Test tool without localization. · adad218b
  JasperBoom authored 3 years ago
  
  adad218b
- Merge branch 'PACBIO' of github.com:biowdl/tasks into PACBIO · e034874e
  JasperBoom authored 3 years ago
  
  e034874e
- Try a different approach. · a422e529
  JasperBoom authored 3 years ago
  
  a422e529
- Merge branch 'develop' into PACBIO · e7b9b0ec
  Jasper authored 3 years ago
  
  e7b9b0ec
- Try to adjust localization. · 4f879f72
  JasperBoom authored 3 years ago
  
  4f879f72
Jun 11, 2021
- Merge pull request #277 from biowdl/runtime · d4095300
  Jasper authored 3 years ago
  
  fix some runtime settings
  d4095300
- Remove weird line. · 833ad0bf
  JasperBoom authored 3 years ago
  
  833ad0bf
- Merge. · a0218ba0
  JasperBoom authored 3 years ago
  
  a0218ba0
- Fix outputs in ccs. · 6356c481
  JasperBoom authored 3 years ago
  
  6356c481
- Merge branch 'develop' into runtime · 50216a3a
  Jasper authored 3 years ago
  
  50216a3a
- Merge pull request #279 from biowdl/BIOWDL-531 · 5554189e
  Jasper authored 3 years ago
  
  BIOWDL-531: Update tool versions.
  5554189e
- Update scripts. · 460d3d04
  JasperBoom authored 3 years ago
  
  460d3d04
- Fix lima output naming. · 7251bf27
  JasperBoom authored 3 years ago
  
  7251bf27
Jun 10, 2021
- Update tool versions. · a095517d
  JasperBoom authored 3 years ago
  
  a095517d
Jun 07, 2021

Merge pull request #278 from biowdl/quay-io · 84365831
Ruben Vorderman authored 3 years ago
```
Move pacbio-merge image to quay.io
```
84365831

Move pacbio-merge image to quay.io · e7400ced

van den Berg authored 3 years ago

Docker hub has started to remove unused images from free accounts, which
means that it might remove images used by this pipeline without notice.
Therefore the pipeline now exclusively uses images from quay.io or
official repositories from docker hub, which do not have this
limitation.

e7400ced

Jun 02, 2021
- Merge branch 'develop' into runtime · e9896daa
  Cats authored 3 years ago
  
  e9896daa
- fix some runtime settings · 379d0be3
  Cats authored 3 years ago
  
  379d0be3
Jun 01, 2021
- Merge pull request #276 from biowdl/memory · 8e00c99d
  Jasper authored 3 years ago
  
  Fix memory values.
  8e00c99d
- Fix memory values. · 743acb0b
  JasperBoom authored 3 years ago
  
  743acb0b
May 31, 2021
- fix gffcompare · 24a6f110
  Cats authored 3 years ago
  
  24a6f110
May 28, 2021
- Merge pull request #275 from biowdl/refOptional · 1a46ce88
  Cats authored 3 years ago
  
  Make referenceAnnotation optional in GffCompare and add minimumCoverage for stringtie
  1a46ce88
- Merge remote-tracking branch 'origin/develop' into refOptional · 8ed8a020
  Cats authored 3 years ago
  
  8ed8a020
- update changelog · ae1d2c02
  Cats authored 3 years ago
  
  ae1d2c02
Mar 23, 2021
- Merge pull request #274 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · cdbcd68d
  Cats authored 4 years ago
  
  Add new multi package container with umi and samtools
  cdbcd68d
- update changelog · 9c36780b
  cagaser authored 4 years ago
  
  9c36780b
Mar 22, 2021
- update dockerImage · 55818f87
  cagaser authored 4 years ago
  
  55818f87
Mar 18, 2021
- Merge pull request #273 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · f438bf4d
  Cedrick Agaser authored 4 years ago
  
  Add new multi package container with umi and samtools
  f438bf4d
- Update CHANGELOG.md · c791c96a
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  c791c96a
- update CHANGELOG · 2a601648
  cagaser authored 4 years ago
  
  2a601648