Unverified Commit c210b6cf authored by Jasper's avatar Jasper Committed by GitHub
Browse files

Merge pull request #280 from biowdl/PACBIO

Try to adjust localization.
parents d4095300 f2f7411a
......@@ -10,7 +10,11 @@ that users understand how the changes affect the new version.
version 5.0.0-dev
---------------------------
+ Fix output files in ccs.wdl.
+ Samtools: Add mkdir line to `Fastq` task.
+ Add new parameters from CCS version 6.0.0 and add two new outputs:
`ccs_report.txt` & `zmw_metrics.json.gz`.
+ Change CutAdapt memory to `5G`.
+ Increase multiqc base time from 5 to 10.
+ Update biowdl-input-converter to version 0.3.
+ Update minimap2 to version 2.20.
+ Update lima to version 2.2.0.
......
......@@ -122,6 +122,8 @@ task Fastq {
}
command {
set -e
mkdir -p "$(dirname ~{outputRead1})"
samtools fastq \
~{true="-1" false="-s" defined(outputRead2)} ~{outputRead1} \
~{"-2 " + outputRead2} \
......
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