Fix lima output naming.

lima.wdl

@@ -91,13 +91,13 @@ task Lima {
         dirName="$(dirname ~{outputPrefix})"
         find "$(cd ${dirName}; pwd)" -name "*.bam" > bamFiles.txt
         find "$(cd ${dirName}; pwd)" -name "*.bam.pbi" > bamIndexes.txt
-        find "$(cd ${dirName}; pwd)" -name "*.subreadset.xml" > subreadsets.txt
+        find "$(cd ${dirName}; pwd)" -name "*.consensusreadset.xml" > consensusreadset.txt
     >>>
 
     output {
         Array[File] limaBam = read_lines("bamFiles.txt")
         Array[File] limaBamIndex = read_lines("bamIndexes.txt")
-        Array[File] limaXml = read_lines("subreadsets.txt")
+        Array[File] limaXml = read_lines("consensusreadset.txt")
         File limaStderr = outputPrefix + ".lima.stderr.log"
         File limaJson = outputPrefix + ".json"
         File limaCounts = outputPrefix + ".lima.counts"