Unverified Commit cdbcd68d authored by Cats's avatar Cats Committed by GitHub
Browse files

Merge pull request #274 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools

Add new multi package container with umi and samtools
parents f438bf4d 9c36780b
......@@ -10,6 +10,7 @@ that users understand how the changes affect the new version.
version 5.0.0-dev
---------------------------
+ UMI-tools: update default dockerImage to use umitools v1.1.1 with correct samtools version (1.10)
+ UMI-tools: re-introduce samtools indexing
+ UMI-tools: update default dockerImage to use umitools v1.1.1
+ UMI-tools dedup: Add tempdir
......
......@@ -31,7 +31,7 @@ task Extract {
Boolean threePrime = false
Int timeMinutes = 1 + ceil(size([read1, read2], "G") * 2)
String dockerImage = "quay.io/biocontainers/mulled-v2-509311a44630c01d9cb7d2ac5727725f51ea43af:f9d5e41daab14b273ff04f257621890af6f82b93-0"
String dockerImage = "quay.io/biocontainers/mulled-v2-509311a44630c01d9cb7d2ac5727725f51ea43af:3067b520386698317fd507c413baf7f901666fd4-0"
}
command {
......@@ -87,7 +87,7 @@ task Dedup {
String memory = "25G"
Int timeMinutes = 30 + ceil(size(inputBam, "G") * 30)
String dockerImage = "quay.io/biocontainers/mulled-v2-509311a44630c01d9cb7d2ac5727725f51ea43af:f9d5e41daab14b273ff04f257621890af6f82b93-0"
String dockerImage = "quay.io/biocontainers/mulled-v2-509311a44630c01d9cb7d2ac5727725f51ea43af:3067b520386698317fd507c413baf7f901666fd4-0"
}
String outputBamIndex = sub(outputBamPath, "\.bam$", ".bai")
......
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