Commits · 89348dde8a84cd1d935999255c64428c99db7042 · biowdl / tasks

Feb 09, 2022
- Remove newline · 89348dde
  Ruben Vorderman authored 3 years ago
  
  89348dde
- Git fetch develop · 752b8cb4
  Ruben Vorderman authored 3 years ago
  
  752b8cb4
- Specifically check origin · 9216a3f8
  Ruben Vorderman authored 3 years ago
  
  9216a3f8
- Only chek files that are different from the base with womtool validate · b54c140d
  Ruben Vorderman authored 3 years ago
  
  b54c140d
- Correctly use data · d9638187
  Ruben Vorderman authored 3 years ago
  
  d9638187
- Set correct env cache param · 8113bfdd
  Ruben Vorderman authored 3 years ago
  
  8113bfdd
- Add lint-evnironment · 4f7af2ed
  Ruben Vorderman authored 3 years ago
  
  4f7af2ed
- Use mamba env update · b026b5a8
  Ruben Vorderman authored 3 years ago
  
  b026b5a8
- Use cache · 41fda1a9
  Ruben Vorderman authored 3 years ago
  
  41fda1a9
- Add missing done statement · fd1a6426
  Ruben Vorderman authored 3 years ago
  
  fd1a6426
- Merge branch 'develop' into BIOWDL-583 · 4a64eb43
  Ruben Vorderman authored 3 years ago
  
  4a64eb43
- Implement all checks in lint.yml directly · a36a2274
  Ruben Vorderman authored 3 years ago
  
  a36a2274
- Use a separate lint file · 391bb0de
  Ruben Vorderman authored 3 years ago
  
  391bb0de
Jan 28, 2022
- add missing parameter_meta · f234b0e8
  Cats authored 3 years ago
  
  f234b0e8
Jan 27, 2022
- Merge pull request #298 from biowdl/sage · b13fd31b
  Cats authored 3 years ago
  
  Updates for WGSinCancerDiagnostics
  Unverified
  
  b13fd31b
- update healthchecker · fb91a024
  Cats authored 3 years ago
  
  fb91a024
Jan 26, 2022
- adress comments · bf4c1a3e
  Cats authored 3 years ago
  
  bf4c1a3e
- update scripts and changelog · 99215fdd
  Cats authored 3 years ago
  
  99215fdd
- Merge remote-tracking branch 'origin/develop' into sage · 73932097
  Cats authored 3 years ago
  
  73932097
Jan 19, 2022
- increase resources GRIDSS · 89a0324a
  Cats authored 3 years ago
  
  89a0324a
Dec 14, 2021
- Use mamba-forge and mamba to install dependencies · 832a131c
  Ruben Vorderman authored 3 years ago
  
  832a131c
- Merge pull request #295 from biowdl/BIOWDL-576 · a56d2f18
  Ruben Vorderman authored 3 years ago
  
  Add sample position in array task, update parameter_meta for macs2.
  Unverified
  
  a56d2f18
- More correct evaluation of controlBams input · 019cbb96
  Ruben Vorderman authored 3 years ago
  
  019cbb96
- Update changelog · 17746ebb
  Ruben Vorderman authored 3 years ago
  
  17746ebb
- Add time minutes parameter · 24ef5634
  Ruben Vorderman authored 3 years ago
  
  24ef5634
- Add parameter_meta for macs2 · c21d27ff
  Ruben Vorderman authored 3 years ago
  
  c21d27ff
Dec 06, 2021
- Require 5 minutes · d970e689
  Ruben Vorderman authored 3 years ago
  
  d970e689
- Add sampleposition in array task · 86a24982
  Ruben Vorderman authored 3 years ago
  
  86a24982
Nov 26, 2021
- give dictionary and index to virusbreakend · 787ad56b
  Cats authored 3 years ago
  
  787ad56b
Nov 15, 2021
- make recovery sv vcf optional in purple · e9f3c5fd
  Cats authored 3 years ago
  
  e9f3c5fd
Nov 13, 2021
- gridss more memory · d3d20400
  Cats authored 3 years ago
  
  d3d20400
Nov 12, 2021
- change gridss runtime settings · 1a9a8058
  Cats authored 3 years ago
  
  1a9a8058
- use alternative gridss image for virusbreakend · f64bd536
  Cats authored 3 years ago
  
  f64bd536
- increase gridss memory · c9657636
  Cats authored 3 years ago
  
  c9657636
Nov 11, 2021
- increase memory gridss · f9ed6158
  Cats authored 3 years ago
  
  f9ed6158
Nov 10, 2021
- upgrade gridss to 2.12.2 · 7d1f9c92
  Cats authored 3 years ago
  
  7d1f9c92
Nov 09, 2021
- try version 2.11.1 for gridss · 0a1995df
  Cats authored 3 years ago
  
  0a1995df
Nov 08, 2021
- add img input for virusbreakend · 9e868dbc
  Cats authored 3 years ago
  
  9e868dbc
Oct 29, 2021
- Merge pull request #293 from leipzig/patch-1 · 933e473d
  Ruben Vorderman authored 3 years ago
  
  bump scatterregions container
  Unverified
  
  933e473d
Oct 28, 2021
- Merge pull request #1 from leipzig/patch-2 · a848ae1d
  Jeremy Leipzig authored 3 years ago
  
  Update CHANGELOG.md
  Unverified
  
  a848ae1d