Commits · 4f879f72aec90d36d0201e9c1b54154f9decb757 · biowdl / tasks

Jun 14, 2021
- Try to adjust localization. · 4f879f72
  JasperBoom authored 3 years ago
  
  4f879f72
Jun 11, 2021
- Remove weird line. · 833ad0bf
  JasperBoom authored 3 years ago
  
  833ad0bf
- Merge. · a0218ba0
  JasperBoom authored 3 years ago
  
  a0218ba0
- Fix outputs in ccs. · 6356c481
  JasperBoom authored 3 years ago
  
  6356c481
- Merge branch 'develop' into runtime · 50216a3a
  Jasper authored 3 years ago
  
  50216a3a
- Merge pull request #279 from biowdl/BIOWDL-531 · 5554189e
  Jasper authored 3 years ago
  
  BIOWDL-531: Update tool versions.
  5554189e
- Update scripts. · 460d3d04
  JasperBoom authored 3 years ago
  
  460d3d04
- Fix lima output naming. · 7251bf27
  JasperBoom authored 3 years ago
  
  7251bf27
Jun 10, 2021
- Update tool versions. · a095517d
  JasperBoom authored 3 years ago
  
  a095517d
Jun 07, 2021

Merge pull request #278 from biowdl/quay-io · 84365831
Ruben Vorderman authored 3 years ago
```
Move pacbio-merge image to quay.io
```
84365831

Move pacbio-merge image to quay.io · e7400ced

van den Berg authored 3 years ago

Docker hub has started to remove unused images from free accounts, which
means that it might remove images used by this pipeline without notice.
Therefore the pipeline now exclusively uses images from quay.io or
official repositories from docker hub, which do not have this
limitation.

e7400ced

Jun 02, 2021
- Merge branch 'develop' into runtime · e9896daa
  Cats authored 3 years ago
  
  e9896daa
- fix some runtime settings · 379d0be3
  Cats authored 3 years ago
  
  379d0be3
Jun 01, 2021
- Merge pull request #276 from biowdl/memory · 8e00c99d
  Jasper authored 3 years ago
  
  Fix memory values.
  8e00c99d
- Fix memory values. · 743acb0b
  JasperBoom authored 3 years ago
  
  743acb0b
May 31, 2021
- fix gffcompare · 24a6f110
  Cats authored 3 years ago
  
  24a6f110
May 28, 2021
- Merge pull request #275 from biowdl/refOptional · 1a46ce88
  Cats authored 3 years ago
  
  Make referenceAnnotation optional in GffCompare and add minimumCoverage for stringtie
  1a46ce88
- Merge remote-tracking branch 'origin/develop' into refOptional · 8ed8a020
  Cats authored 3 years ago
  
  8ed8a020
- update changelog · ae1d2c02
  Cats authored 3 years ago
  
  ae1d2c02
Mar 23, 2021
- Merge pull request #274 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · cdbcd68d
  Cats authored 4 years ago
  
  Add new multi package container with umi and samtools
  cdbcd68d
- update changelog · 9c36780b
  cagaser authored 4 years ago
  
  9c36780b
Mar 22, 2021
- update dockerImage · 55818f87
  cagaser authored 4 years ago
  
  55818f87
Mar 18, 2021
- Merge pull request #273 from biowdl/addNewMultiPackageContainerWithUmiAndSamtools · f438bf4d
  Cedrick Agaser authored 4 years ago
  
  Add new multi package container with umi and samtools
  f438bf4d
- Update CHANGELOG.md · c791c96a
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  c791c96a
- update CHANGELOG · 2a601648
  cagaser authored 4 years ago
  
  2a601648
Mar 17, 2021
- update dockerImage and re-introduce samtools indexing · 2410d0d5
  cagaser authored 4 years ago
  
  2410d0d5
- update changelog · beb54440
  cagaser authored 4 years ago
  
  beb54440
Mar 08, 2021
- Merge pull request #272 from biowdl/UmiTools_addTmpDir · 2d04addf
  Cedrick Agaser authored 4 years ago
  
  Umi tools add tmp dir
  2d04addf
- Merge remote-tracking branch 'refs/remotes/origin/UmiTools_addTmpDir' into UmiTools_addTmpDir · 051ac6aa
  cagaser authored 4 years ago
  
  051ac6aa
- remove comment · 7c8209ef
  cagaser authored 4 years ago
  
  7c8209ef
- Update umi-tools.wdl · 0f448cf2
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Davy Cats <davycats.dc@gmail.com>
  0f448cf2
- remove umitools deduped BAM index output · 3b5f1476
  cagaser authored 4 years ago
  
  3b5f1476
- update default dockerimage · f8f2b9e4
  cedrick authored 4 years ago
  
  f8f2b9e4
- add default tmpdir · 2a151b50
  cedrick authored 4 years ago
  
  2a151b50
Mar 04, 2021
- update umi-tools.wdl · 4edc1284
  cagaser authored 4 years ago
  
  4edc1284
- add tmpdir · ee6e66be
  cagaser authored 4 years ago
  
  ee6e66be
Feb 24, 2021
- Merge pull request #271 from biowdl/addDuphold · 2b158fa8
  Cedrick Agaser authored 4 years ago
  
  Add duphold
  2b158fa8
- Update bcftools.wdl · 119e2aca
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  119e2aca
- Update bcftools.wdl · 505c4fc0
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  505c4fc0
- Update CHANGELOG.md · ff4edf7a
  Cedrick Agaser authored 4 years ago
  
  Co-authored-by: Jasper <jboom@infernum.nl>
  ff4edf7a