add default tmpdir

2a151b50 · cedrick · 4edc1284 · 2a151b50
Commit 2a151b50 authored 4 years ago by cedrick
--- a/umi-tools.wdl
+++ b/umi-tools.wdl
@@ -78,7 +78,7 @@ task Dedup {
        File inputBam
        File inputBamIndex
        String outputBamPath
-        String tmpDir
+        String tmpDir = "./umiToolsDedupTmpDir"

        Boolean paired = true