Commits · ae70ddfdd5cfb8862e86b71ac400f41e7ba9be63 · Mirrors / mutalyzer

Sep 23, 2015
- Translate alternative start to M, also in variant · ae70ddfd
  Vermaat authored 9 years ago
  ae70ddfd
Aug 04, 2015
- Fix bug in recognizing p.(=) · 6435f0cf
  Vermaat authored 9 years ago
  
  6435f0cf
Jul 15, 2015
- Uncertain stop codon in protein descriptions (fs and ext) · d2f91690
  Vermaat authored 9 years ago
  d2f91690
Jul 09, 2015
- Fix cache fixture in tests · f1e57a13
  Vermaat authored 9 years ago
  
  f1e57a13
Jan 30, 2015
- Discard incomplete genes in genbank reference files · 73c0862f
  Vermaat authored 10 years ago
  73c0862f
- Fix broken DMD reference in unit tests · 51d8cc50
  Vermaat authored 10 years ago
  
  51d8cc50
Oct 20, 2014
- Use unicode strings · 2a4dc3c1
  Vermaat authored 10 years ago
  2a4dc3c1
Aug 27, 2014
- Move from nose to pytest for unit tests · e6f19d1c
  Vermaat authored 10 years ago
  e6f19d1c
Mar 01, 2014
- Reverse complement range insertions/insertion-deletions · 57120a89
  Vermaat authored 11 years ago
  57120a89
Feb 28, 2014
- Range and compound insertions/insertion-deletions · 31b2f13a
  Vermaat authored 11 years ago
  31b2f13a
Jan 22, 2014
- Use fixtures in the unit tests · c49d49f0
  Vermaat authored 11 years ago
  c49d49f0
Jan 04, 2014
- Some fixes for running the unit tests · f2a6cc59
  Vermaat authored 11 years ago
  
  f2a6cc59
- Temporarily skip tests using AL449423.14 (no longer valid) · 323a8be1
  Vermaat authored 11 years ago
  
  323a8be1
Dec 23, 2013
- Fix unit tests with SQLAlchemy · 94df7c07
  Vermaat authored 11 years ago
  94df7c07
Dec 19, 2013
- Update unit tests for new style configuration · 135866c3
  Vermaat authored 11 years ago
  
  135866c3
Feb 25, 2013
- Warning on non-adjacent exons in transcript reference · bd3ce1d1
  Vermaat authored 12 years ago
  bd3ce1d1
Feb 12, 2013
- Use WNOMRNA_OTHER when appropriate (fixes #132) · c2b54871
  Vermaat authored 12 years ago
  c2b54871
Dec 11, 2012
- Update LRG parser for updated schema (incomplete) · e84bdeb8
  Vermaat authored 12 years ago
  e84bdeb8
Oct 04, 2012
- Warn on missing positioning scheme (fixes #114) · 1ec48b68
  Vermaat authored 12 years ago
  1ec48b68
Jul 26, 2012
- Unit test for issue #108 · 7e6dd859
  Vermaat authored 12 years ago
  7e6dd859
Jun 21, 2012
- Do not crash on inversions (introduced in r528) (fixes #99) · acfb2415
  Vermaat authored 12 years ago
  acfb2415
- First download reference in GI unit tests · 061f3d34
  Vermaat authored 12 years ago
  061f3d34
Mar 12, 2012
- Use UD slices in unit tests · 451b671d
  Vermaat authored 13 years ago
  451b671d
- Better descriptions on chromosome · d07b822a
  Vermaat authored 13 years ago
  d07b822a
Feb 21, 2012
- Fix del with deleted sequence length as argument · 1b7c9c03
  Vermaat authored 13 years ago
  1b7c9c03
Jan 31, 2012
- Describe NOP variants with = (#88) · 0c5f32ea
  Vermaat authored 13 years ago
  0c5f32ea
- Unit tests for GI references · 6ead8b65
  Vermaat authored 13 years ago
  6ead8b65
Jan 26, 2012
- Do not crash on non-numeric locus tag end, fixes #81 · 38f90d91
  Vermaat authored 13 years ago
  38f90d91
Jan 25, 2012
- Fix LRG reference sequences · 5f77ecaf
  Vermaat authored 13 years ago
  5f77ecaf
Dec 14, 2011
- Do not crash on EX positioning (fixes #79) · 2809d839
  Vermaat authored 13 years ago
  2809d839
Nov 24, 2011
- Add strandedness to BED tracks · 325130bb
  Vermaat authored 13 years ago
  325130bb
Nov 14, 2011
- Fix crash on variant without reference (thx Ivar) · 5fdc74c3
  Vermaat authored 13 years ago
  5fdc74c3
Nov 08, 2011
- Retrieve full sequence for contig reference files · cff8ea36
  Vermaat authored 13 years ago
  cff8ea36
Nov 04, 2011
- Use implicit configuration object creation · ae2ae0c8
  Vermaat authored 13 years ago
  ae2ae0c8
Oct 20, 2011
- Implement BED tracks for Genome Browser · 8402dae3
  Vermaat authored 13 years ago
  8402dae3
Aug 24, 2011
- Get only primary assembly mappings in position converter (naive fix for #58). · 11eb9eec
  Vermaat authored 13 years ago
  11eb9eec
Aug 18, 2011
- Fix a bug in commit r324, allowing ordinary delins again. · 7bc44ba1
  Vermaat authored 13 years ago
  7bc44ba1
- Fix splicing bug, affecting variant protein descriptions. · fb2e95c4
  Vermaat authored 13 years ago
  fb2e95c4
- Preliminary implementation of issue #38 (unknown exon offsets). · abe2a056
  Vermaat authored 13 years ago
  abe2a056
Aug 16, 2011
- Fix: don't remove flanking splice sites on deletion of exons on a transcript · a6434a92
  Vermaat authored 13 years ago
  a6434a92