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  1. Sep 23, 2015
    • Vermaat's avatar
      Translate alternative start to M, also in variant · ae70ddfd
      Vermaat authored
      In case of an alternative start codon, the variant CDS was not
      translated to a protein starting with M. This caused the protein
      description machinery to conclude a variant affecting the start
      codon, hence reporting `p.?`.
      
      We fix this by always translating the start codon to M (except
      when the variant actually affects it).
      
      Example: `NM_024426.4:c.1107A>G` (a synomymous mutation) should
      yield `NM_024426.4(WT1_i001):p.(=)`, not `p.?`. The start codon
      for that protein is `CTG`.
      ae70ddfd
  2. Sep 22, 2015
  3. Sep 21, 2015
  4. Sep 18, 2015
  5. Sep 11, 2015
  6. Sep 07, 2015
  7. Aug 28, 2015
  8. Aug 11, 2015
  9. Aug 10, 2015
  10. Aug 06, 2015
  11. Aug 04, 2015
  12. Jul 21, 2015
  13. Jul 20, 2015
    • Vermaat's avatar
      Fix transcript mappings containing no exons · 5e0d444a
      Vermaat authored
      For transcripts without any UTR and CDS entries in the NCBI Mapview
      file (seems to happen for  predicted genes), we generate one exon
      spanning the entire transcript.
      5e0d444a
  14. Jul 16, 2015
  15. Jul 15, 2015
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