Commits · feeafebb314e1a73877c2b2ad665d3a6cc5875ad · Mirrors / biopet.biopet

Aug 20, 2014
- Fix bug on single end library's · feeafebb
  Peter van 't Hof authored 10 years ago
  
  feeafebb
- Merge commit '18e080e1 ' into sander · 20871e07
  sajvanderzeeuw authored 10 years ago
  
  20871e07
Aug 19, 2014
- added all BWA options · d0768d9f
  sajvanderzeeuw authored 10 years ago
  
  d0768d9f
- Moved Flexiprep val to root op mapping class · 18e080e1
  Peter van 't Hof authored 10 years ago
  
  18e080e1
- Remove version command for picard · 89121481
  Peter van 't Hof authored 10 years ago
  
  89121481
- Debug sickle wrapper · 7ab284fd
  sajvanderzeeuw authored 10 years ago
  
  7ab284fd
- Fix bug when json parse failed · 3946dd26
  Peter van 't Hof authored 10 years ago
  
  3946dd26
Aug 18, 2014
- Fix bug on single end bam files · 22fdb87e
  Peter van 't Hof authored 10 years ago
  
  22fdb87e
- Changed one option in BWA.scala so mapping had to be changed as well · 00b8265b
  sajvanderzeeuw authored 10 years ago
  
  00b8265b
- Added all Sickle Options · f2db87ce
  sajvanderzeeuw authored 10 years ago
  
  f2db87ce
- Added all BWA mem options · 4ddf34bf
  sajvanderzeeuw authored 10 years ago
  
  4ddf34bf
- Change chunk directory · 1ca59443
  Peter van 't Hof authored 10 years ago
  
  1ca59443
- Spelling fix · c36fb267
  Peter van 't Hof authored 10 years ago
  
  c36fb267
- Changes actions for BedToIntervals tests · 3dbf492f
  Peter van 't Hof authored 10 years ago
  
  3dbf492f
- Changed run to library · 7892b57c
  Peter van 't Hof authored 10 years ago
  
  7892b57c
- Removed the Gatk-Old from the pom.xml · eac4ec9e
  Peter van 't Hof authored 10 years ago
  
  eac4ec9e
- Changed Int to Long · 610b8971
  Peter van 't Hof authored 10 years ago
  
  610b8971
- Fix bug on VariantEval -L option · 661c7456
  Peter van 't Hof authored 10 years ago
  
  661c7456
Aug 15, 2014
- Added a default vmem · 1f80f95b
  Peter van 't Hof authored 10 years ago
  
  1f80f95b
- Skipping lines that are not correct bed entry's · a5876f3f
  Peter van 't Hof authored 10 years ago
  
  a5876f3f
Aug 14, 2014
- Added targetBed option · d8056e3d
  Peter van 't Hof authored 10 years ago
  
  d8056e3d
- Added Vcf sample compare module · d94892dd
  Peter van 't Hof authored 10 years ago
  
  d94892dd
- Added targetBait config option · 7729a31b
  Peter van 't Hof authored 10 years ago
  
  7729a31b
- Fix array on json file · 0683782a
  Peter van 't Hof authored 10 years ago
  
  0683782a
- Fix on end files on flexiprep, not intermediate anymore · 9d40cb55
  Peter van 't Hof authored 10 years ago
  
  9d40cb55
Aug 12, 2014
- Added md5sums for excutebles · de30ed59
  Peter van 't Hof authored 10 years ago
  
  de30ed59
- Fix class name for report · 9ff06b99
  Peter van 't Hof authored 10 years ago
  
  9ff06b99
- Fastqc now compatible to version 0.11.2 · ee8bfca5
  Peter van 't Hof authored 10 years ago
  
  ee8bfca5
- Fix compile errors · c5f4ca8b
  Peter van 't Hof authored 10 years ago
  
  c5f4ca8b
- Added Float option · 038301cc
  Peter van 't Hof authored 10 years ago
  
  038301cc
- Merge commit 'dd952f2e ' · 27f6c1a4
  Peter van 't Hof authored 10 years ago
  
  27f6c1a4
Aug 11, 2014
- Add unit tests to Ln extension · dd952f2e
  bow authored 10 years ago
  
  dd952f2e
- Add initial cufflinks wrapper · 58f89857
  bow authored 10 years ago
  
  58f89857
- Update Sha1sum documentation · ceee380c
  bow authored 10 years ago
  
  ceee380c
- Removed unused imports · 48524cb0
  Peter van 't Hof authored 10 years ago
  
  48524cb0
- Merge commit 'fa3bbb63 ' into peter · b43fa492
  Peter van 't Hof authored 10 years ago
  
  b43fa492
- Relative path calculation fix · fa3bbb63
  bow authored 10 years ago
  
  fa3bbb63
- Fix name on summary · 72e950b6
  Peter van 't Hof authored 10 years ago
  
  72e950b6
- Move init jobs for flexiprep out of chunks · e294fd51
  Peter van 't Hof authored 10 years ago
  
  e294fd51
- Output of flexiprep is now a zipped file · d26a67ab
  Peter van 't Hof authored 10 years ago
  
  d26a67ab