Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Mirrors
biopet.biopet
Commits
9d40cb55
Commit
9d40cb55
authored
Aug 14, 2014
by
Peter van 't Hof
Browse files
Fix on end files on flexiprep, not intermediate anymore
parent
de30ed59
Changes
1
Hide whitespace changes
Inline
Side-by-side
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
View file @
9d40cb55
...
...
@@ -224,8 +224,8 @@ class Flexiprep(val root: Configurable) extends QScript with BiopetQScript {
val
R1
=
new
File
(
outputDir
+
R1_name
+
".qc"
+
R1_ext
+
".gz"
)
val
R2
=
new
File
(
outputDir
+
R2_name
+
".qc"
+
R2_ext
+
".gz"
)
add
(
Gzip
(
this
,
fastq_R1
,
R1
)
,
true
)
if
(
paired
)
add
(
Gzip
(
this
,
fastq_R2
,
R2
)
,
true
)
add
(
Gzip
(
this
,
fastq_R1
,
R1
))
if
(
paired
)
add
(
Gzip
(
this
,
fastq_R2
,
R2
))
outputFiles
+=
(
"output_R1"
->
R1
)
if
(
paired
)
outputFiles
+=
(
"output_R2"
->
R2
)
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment