Skip to content
GitLab
Commit feeafebb authored by Peter van 't Hof's avatar Peter van 't Hof
Browse files

Fix bug on single end library's

parent 20871e07
Hide whitespace changes
Inline Side-by-side
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/FlexiprepSummary.scala
View file @ feeafebb
......@@ -147,7 +147,7 @@ class FlexiprepSummary(val root: Configurable) extends InProcessFunction with Co
val s = for ((key, value) <- chunks) yield value.seqstatR1after.getSummary
Option(Seqstat.mergeSummarys(s.toList))
}
val R2_proc: Option[Json] = if (!flexiprep.paired && flexiprep.skipClip && flexiprep.skipTrim) None
val R2_proc: Option[Json] = if (!flexiprep.paired || (flexiprep.skipClip && flexiprep.skipTrim)) None
else if (chunks.size == 1) Option(chunks.head._2.seqstatR2after.getSummary)
else {
val s = for ((key, value) <- chunks) yield value.seqstatR2after.getSummary
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment