Commits · f79469b34e0e44b77124be22d01f7963fdb387f4 · Mirrors / biopet.biopet

Jul 27, 2015
- Bumb version 0.4.0-RC1 · 5224df5b
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC1 v0.4.0-RC1
  
  5224df5b
- Adding license · bcc9debe
  Peter van 't Hof authored 9 years ago
  
  bcc9debe
Jul 16, 2015
- Fix symlinking of the final bai file · 12da6e96
  Sander van der Zeeuw authored 9 years ago
  
  12da6e96
Jul 06, 2015
- Added defaults to gsnap for sam format · 1fb2569e
  Sander van der Zeeuw authored 9 years ago
  
  1fb2569e
Jul 03, 2015
- Fix code style warnings · c7b928d3
  Peter van 't Hof authored 9 years ago
  
  c7b928d3
- Fix code style warnings · 2c323f38
  Peter van 't Hof authored 9 years ago
  
  2c323f38
Jul 02, 2015
- https is working now, revert the change but keep the new layout and abbr tag.... · 82e665b3
  Wai Yi Leung authored 9 years ago
  82e665b3
- https is working now, revert the change but keep the new layout and abbr tag. · a83bb91e
  Wai Yi Leung authored 9 years ago
  
  a83bb91e
- Fix the link to sasc.lumc.nl (don't point to the https version, redirect is... · 96c79ed5
  Wai Yi Leung authored 9 years ago
  96c79ed5
Jul 01, 2015
- Optimize imports · 9812237c
  Peter van 't Hof authored 9 years ago
  
  9812237c
- Front page texts for report · 8282c888
  Sander Bollen authored 9 years ago
  
  8282c888
Jun 30, 2015
- Remove sortable tables from file lists · dee7eea1
  Peter van 't Hof authored 9 years ago
  
  dee7eea1
Jun 29, 2015
- Changes method name · 2ce81c48
  Peter van 't Hof authored 9 years ago
  
  2ce81c48
Jun 28, 2015
- Use absolute path for tophat fix output · 657d8684
  bow authored 9 years ago
  
  657d8684
- Update BamMetrics RNA mode and its tests · 5301853f
  bow authored 9 years ago
  
  5301853f
- Style updates · a8a816b5
  bow authored 9 years ago
  
  a8a816b5
Jun 27, 2015
- Rename Seqstat -> SeqStat · 58102415
  bow authored 9 years ago
  
  58102415
- Add step for merging unmapped and mapped tophat alignment files · 2db37a64
  bow authored 9 years ago
  
  2db37a64
Jun 25, 2015
- Bump version to 0.3.2 · b77d7b4c
  bow authored 9 years ago
  
  View commits for tag v0.3.2 v0.3.2
  
  b77d7b4c
- Adding report to mapping pipeline · 7db17d65
  Peter van 't Hof authored 9 years ago
  
  7db17d65
Jun 22, 2015
- Change bwa to bwa-mem · 06cf90cb
  Peter van 't Hof authored 9 years ago
  
  06cf90cb
Jun 21, 2015
- Added executables that are missing on a native osx install · dca682a1
  Peter van 't Hof authored 9 years ago
  
  dca682a1
Jun 08, 2015
- Remove output folder when it's in the summary file · 6d343c05
  Peter van 't Hof authored 9 years ago
  
  6d343c05
Jun 06, 2015
- Added bam and vcf files to report of Shiva · be30372c
  Peter van 't Hof authored 9 years ago
  
  be30372c
May 26, 2015
- Code style fix · ab5e1c96
  Peter van 't Hof authored 9 years ago
  
  ab5e1c96
- Switched to reference module · 8b7765a4
  Peter van 't Hof authored 9 years ago
  
  8b7765a4
May 18, 2015
- Fixed reference summary in Mapping · 5f6a3e0a
  Peter van 't Hof authored 9 years ago
  
  5f6a3e0a
May 12, 2015
- change mem limit · 5c4cdff6
  Sander van der Zeeuw authored 9 years ago
  
  5c4cdff6
May 09, 2015
- Convert R2 to Option[File] · 558d488a
  Peter van 't Hof authored 9 years ago
  
  558d488a
Apr 14, 2015
- Remove redundant SortSam jobs · 2c5c59ea
  Peter van 't Hof authored 10 years ago
  
  2c5c59ea
Apr 06, 2015
- Adding reference stats to summary · a6e3dbc8
  Peter van 't Hof authored 10 years ago
  
  a6e3dbc8
- Change naming · ba931103
  Peter van 't Hof authored 10 years ago
  
  ba931103
- Switch pipeline to reference module · 1eada82e
  Peter van 't Hof authored 10 years ago
  
  1eada82e
Apr 04, 2015
- Set correct intermediates for GSNAP and TopHat in mapping module · 45ef279d
  bow authored 10 years ago
  
  45ef279d
Mar 26, 2015
- Switch to scala 2.10 · 3dc3aad4
  Peter van 't Hof authored 10 years ago
  
  3dc3aad4
Mar 19, 2015
- Bump version from 0.3.0 to 0.3.1 · d2efef6d
  Wai Yi Leung authored 10 years ago
  
  d2efef6d
Mar 17, 2015
- Bump version to 0.4.0-DEV · 5bd4ef22
  bow authored 10 years ago
  
  5bd4ef22
Mar 13, 2015
- Bump version to 0.3.0 · c5e27ef2
  bow authored 10 years ago
  
  c5e27ef2
- Ensure GSNAP output has the same ordering as reference FASTA · 80b0cbcc
  bow authored 10 years ago
  
  80b0cbcc
- Ensure TopHat keeps index contig order when aligning · fb90d825
  bow authored 10 years ago
  
  fb90d825