Remove sortable tables from file lists

public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepInputfiles.ssp

@@ -17,16 +17,16 @@
     val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString
     def removeDir(value: Option[Any]): Option[Any] = {
         value.collect { case a =>
-            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir)
+            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator)
             else a
         }
     }
 }#
 
-<table class="table sortable-theme-bootstrap" data-sortable>
+<table class="table">
 
 <thead><tr>
-    <th data-sorted="true" data-sorted-direction="ascending">Sample</th>
+    <th>Sample</th>
     <th colspan="2">Library</th>
     <th>Path</th>
     <th>MD5</th>

public/flexiprep/src/main/resources/nl/lumc/sasc/biopet/pipelines/flexiprep/flexiprepOutputfiles.ssp

@@ -17,16 +17,16 @@
     val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString
     def removeDir(value: Option[Any]): Option[Any] = {
         value.collect { case a =>
-            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir)
+            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator)
             else a
         }
     }
 }#
 
-<table class="table sortable-theme-bootstrap" data-sortable>
+<table class="table">
 
 <thead><tr>
-    <th data-sorted="true" data-sorted-direction="ascending">Sample</th>
+    <th>Sample</th>
     <th colspan="2">Library</th>
     <th>Path</th>
     <th>MD5</th>

public/mapping/src/main/resources/nl/lumc/sasc/biopet/pipelines/mapping/outputBamfiles.ssp

@@ -20,7 +20,7 @@
     val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString
     def removeDir(value: Option[Any]): Option[Any] = {
         value.collect { case a =>
-            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir)
+            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator)
             else a
         }
     }
@@ -28,9 +28,9 @@
 
 <div class="panel-body">
 <!-- Table -->
-<table class="table sortable-theme-bootstrap" data-sortable>
+<table class="table">
     <thead><tr>
-        <th data-sorted="true" data-sorted-direction="ascending">Sample</th>
+        <th>Sample</th>
         #if (!sampleLevel) <th>Library</th> #end
         <th>Path</th>
         <th>MD5</th>

public/shiva/src/main/resources/nl/lumc/sasc/biopet/pipelines/shiva/outputVcfFiles.ssp

@@ -13,7 +13,7 @@
     val pipelineOutputDir = summary.getValue("meta", "output_dir").getOrElse("").toString
     def removeDir(value: Option[Any]): Option[Any] = {
         value.collect { case a =>
-            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir)
+            if (a.toString.startsWith(pipelineOutputDir) && pipelineOutputDir.nonEmpty) "./" + a.toString.stripPrefix(pipelineOutputDir + File.separator)
             else a
         }
     }
@@ -21,7 +21,7 @@
 
 <div class="panel-body">
 <!-- Table -->
-<table class="table sortable-theme-bootstrap" data-sortable>
+<table class="table">
     <thead><tr>
         <th>Variantcaller</th>
         <th>Path</th>