Conflicts:
	public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
	public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala

Patch mapping

Fix for #122

See merge request !120

Patch summary versions

Fix for Some(versions) in summary

See merge request !118

Patch seqstat

Fix for #121

See merge request !119

bow authored Mar 05, 2015 and Peter van 't Hof committed Mar 09, 2015

(cherry picked from commit 6ca9d8be)

Feature scaladocs

Added scala docs to all extensions, utils and pipeline template.

See also #37

See merge request !116

Patch carp summary fix

In the CARP pipeline we forgot to fill in the global summary file. So this had to be added. Tested and works fine now!

See merge request !115