Merge branch 'develop' into feature-shiva
Conflicts: public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/samtools/SamtoolsMpileup.scala
No related branches found
No related tags found
Showing
- protected/biopet-gatk-pipelines/src/main/scala/nl/lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala 1 addition, 1 deletion.../lumc/sasc/biopet/pipelines/gatk/GatkVariantcalling.scala
- public/basty/src/main/scala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala 3 additions, 3 deletions...cala/nl/lumc/sasc/biopet/pipelines/basty/BastyTrait.scala
- public/biopet-framework/nb-configuration.xml 0 additions, 46 deletionspublic/biopet-framework/nb-configuration.xml
- public/biopet-framework/nbactions-yamsvp.xml 0 additions, 67 deletionspublic/biopet-framework/nbactions-yamsvp.xml
- public/biopet-framework/nbactions.xml 0 additions, 66 deletionspublic/biopet-framework/nbactions.xml
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala 19 additions, 29 deletions...umc/sasc/biopet/core/BiopetCommandLineFunctionTrait.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala 2 additions, 2 deletions...scala/nl/lumc/sasc/biopet/core/summary/WriteSummary.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Bowtie.scala 6 additions, 0 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Bowtie.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cat.scala 14 additions, 0 deletions...k/src/main/scala/nl/lumc/sasc/biopet/extensions/Cat.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala 10 additions, 6 deletions.../main/scala/nl/lumc/sasc/biopet/extensions/Cutadapt.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala 10 additions, 4 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Fastqc.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala 15 additions, 0 deletions...rk/src/main/scala/nl/lumc/sasc/biopet/extensions/Ln.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Md5sum.scala 5 additions, 7 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Md5sum.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Pbzip2.scala 4 additions, 0 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Pbzip2.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/PythonCommandLineFunction.scala 12 additions, 0 deletions...mc/sasc/biopet/extensions/PythonCommandLineFunction.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala 29 additions, 22 deletions...src/main/scala/nl/lumc/sasc/biopet/extensions/Raxml.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/RunGubbins.scala 7 additions, 0 deletions...ain/scala/nl/lumc/sasc/biopet/extensions/RunGubbins.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Sha1sum.scala 6 additions, 10 deletions...c/main/scala/nl/lumc/sasc/biopet/extensions/Sha1sum.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala 8 additions, 0 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Sickle.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/Stampy.scala 5 additions, 2 deletions...rc/main/scala/nl/lumc/sasc/biopet/extensions/Stampy.scala
Loading
Please register or sign in to comment