Commits · daf02820d1c110b56f333a518c9504252df5f17c · Mirrors / biopet.biopet

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Aug 08, 2014
- Removed skipsummary option · daf02820
  Peter van 't Hof authored Aug 8, 2014
  
  daf02820
Aug 07, 2014
- Fix jobname · 30839b70
  Peter van 't Hof authored Aug 7, 2014
  
  30839b70
Aug 06, 2014
- Removed old summary and fix file name for new summary · 8c8bb2f3
  Peter van 't Hof authored Aug 6, 2014
  
  8c8bb2f3
- Finalize summary structure · e6527f3b
  Peter van 't Hof authored Aug 6, 2014
  
  e6527f3b
- Added getSummary function · e469c3ab
  Peter van 't Hof authored Aug 6, 2014
  
  e469c3ab
- Make Sample and library name required · 48431cd5
  Peter van 't Hof authored Aug 6, 2014
  
  48431cd5
Aug 05, 2014
- Fix on stats output file · e554e595
  Peter van 't Hof authored Aug 5, 2014
  
  e554e595
Aug 04, 2014
- Added SeqtkSeq to flexiprep · 1e3bfb26
  Peter van 't Hof authored Aug 4, 2014
  
  1e3bfb26
- Added constructor · eac6893d
  Peter van 't Hof authored Aug 4, 2014
  
  eac6893d
- fix on test file · 8a242160
  Peter van 't Hof authored Aug 4, 2014
  
  8a242160
- Use of new constructors · 7c1fa255
  Peter van 't Hof authored Aug 4, 2014
  
  7c1fa255
- Added contructor · e5d44e32
  Peter van 't Hof authored Aug 4, 2014
  
  e5d44e32
- Added SeqtkSeq function to Flexiprep · 43c985ef
  Peter van 't Hof authored Aug 4, 2014
  
  43c985ef
- Fix optional symlink error in Cutadapt step in Flexiprep · 37653696
  bow authored Aug 4, 2014
  
  37653696
Jul 30, 2014
- Wrappers are now split in general and specific flexiprep extensions · 6b5c4320
  Peter van 't Hof authored Jul 30, 2014
  
  6b5c4320
- Update style and exclude JSON defs from style reformatting · 19b4d9eb
  bow authored Jul 30, 2014
  
  19b4d9eb
- Style reformatting · 19f47e48
  bow authored Jul 30, 2014
  
  19f47e48
- Fix bug in Flexiprep python summary script · df98d70a
  bow authored Jul 30, 2014
  
  df98d70a
Jul 29, 2014
- Fix flexiprep summary json parsing · 2b595c2c
  bow authored Jul 29, 2014
  
  2b595c2c
- Fix on output directories of sha1sum and seqstat · 0aabeb73
  bow authored Jul 29, 2014
  
  0aabeb73
- Fix Ln import with new namespace · b121e619
  bow authored Jul 29, 2014
  
  b121e619
- Flexiprep passes jobs to new summary · 397a0a5d
  Peter van 't Hof authored Jul 29, 2014
  
  397a0a5d
- Use relative paths in empty cutadapt commands · 7731bd62
  bow authored Jul 29, 2014
  
  7731bd62
- Use relative symlinks by default in Flexiprep final files · deac9640
  bow authored Jul 29, 2014
  
  deac9640
- changed function to extensions · dd4f0175
  Peter van 't Hof authored Jul 29, 2014
  
  dd4f0175
- Seqstat now uses quality type data · 3501d2eb
  Peter van 't Hof authored Jul 28, 2014
  
  3501d2eb
- Function to get encoding of the fastq file, replaces python script · f0f070f7
  Peter van 't Hof authored Jul 27, 2014
  
  f0f070f7
Jul 28, 2014
- Seqstat now uses quality type data · 8e67bf4f
  Peter van 't Hof authored Jul 28, 2014
  
  8e67bf4f
- Update scripts default location to follow Maven convention · 210c6b69
  bow authored Jul 28, 2014
  
  210c6b69
- Update flexiprep summary file name · c6b4115d
  bow authored Jul 28, 2014
  
  c6b4115d
- Output cutadapt statistics correctly in summary files · 556fc8c1
  bow authored Jul 28, 2014
  
  556fc8c1
- Fix on fastqc jobs · cde8f1a6
  Peter van 't Hof authored Jul 28, 2014
  
  cde8f1a6
- Revert "Fix on fastqc jobs" · 373dbb5c
  Peter van 't Hof authored Jul 28, 2014
  373dbb5c
- Fix on fastqc jobs · 613343f7
  Peter van 't Hof authored Jul 28, 2014
  
  613343f7
- Switch to functions · e7f818e2
  Peter van 't Hof authored Jul 28, 2014
  
  e7f818e2
- Fix on output variable · 1395457c
  Peter van 't Hof authored Jul 27, 2014
  
  1395457c
- Add cutadapt statistics output to flexiprep runs · d3a453a1
  bow authored Jul 28, 2014
  
  d3a453a1
Jul 27, 2014
- First version of summary of flexiprep in queue/scala · e6f07f76
  Peter van 't Hof authored Jul 27, 2014
  
  e6f07f76
- Function to get encoding of the fastq file, replaces python script · 2a2a37fd
  Peter van 't Hof authored Jul 27, 2014
  
  2a2a37fd
- Fix on output variable · 096d8a0e
  Peter van 't Hof authored Jul 27, 2014
  
  096d8a0e