Commit 19b4d9eb authored by bow's avatar bow
Browse files

Update style and exclude JSON defs from style reformatting

parent 19f47e48
......@@ -99,19 +99,22 @@ class FlexiprepSummary(val root: Configurable) extends InProcessFunction with Co
deps ::= fastqSync.output_stats
return fastqSync
}
// format: OFF
override def run {
logger.debug("Start")
val summary = ("flexiprep" := (("clipping" := !flexiprep.skipClip) ->:
("trimming" := !flexiprep.skipTrim) ->:
("paired" := flexiprep.paired) ->:
jEmptyObject)) ->:
val summary =
("flexiprep" := (
("clipping" := !flexiprep.skipClip) ->:
("trimming" := !flexiprep.skipTrim) ->:
("paired" := flexiprep.paired) ->:
jEmptyObject)) ->:
("seqstat" := seqstatSummary) ->:
("sha1" := sha1Summary) ->:
("fastqc" := fastqcSummary) ->:
("clipping" :=? clipstatSummary) ->?:
("trimming" :=? trimstatSummary) ->?:
jEmptyObject
// format: ON
logger.debug(summary.spaces2) // TODO: need output writter
logger.debug("Stop")
}
......@@ -209,4 +212,4 @@ class FlexiprepSummary(val root: Configurable) extends InProcessFunction with Co
return Option(Sickle.mergeSummarys(s.toList))
}
}
}
\ No newline at end of file
}
......@@ -10,7 +10,7 @@ indentLocalDefs=false
indentPackageBlocks=true
indentSpaces=2
placeScaladocAsterisksBeneathSecondAsterisk=false
preserveDanglingCloseParenthesis=false
preserveDanglingCloseParenthesis=true
preserveSpaceBeforeArguments=false
rewriteArrowSymbols=false
spaceBeforeColon=false
......
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