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Commit 096d8a0e authored by Peter van 't Hof's avatar Peter van 't Hof
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Fix on output variable

parent 16a08dfd
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......@@ -62,7 +62,7 @@ object Fastqc {
if (filename.endsWith(".gzip")) filename = filename.substring(0, filename.size - 5)
if (filename.endsWith(".fastq")) filename = filename.substring(0, filename.size - 6)
//if (filename.endsWith(".fq")) filename = filename.substring(0,filename.size - 3)
fastqcCommand.jobOutputFile = new File(outDir + "/" + filename + "_fastqc.zip")
fastqcCommand.output = new File(outDir + "/" + filename + "_fastqc.zip")
fastqcCommand.afterGraph
return fastqcCommand
}
......
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