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1e3bfb26

Commit 1e3bfb26 authored 10 years ago by Peter van 't Hof

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Added SeqtkSeq to flexiprep

parent 82597e1f

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Changes 7

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flexiprep/examples/test.json 3 additions, 5 deletions

flexiprep/examples/test.json
flexiprep/nbactions.xml 3 additions, 3 deletions

flexiprep/nbactions.xml
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala 1 addition, 1 deletion

...cala/nl/lumc/sasc/biopet/pipelines/flexiprep/Fastqc.scala
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala 17 additions, 16 deletions

...a/nl/lumc/sasc/biopet/pipelines/flexiprep/Flexiprep.scala
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/SeqtkSeq.scala 6 additions, 1 deletion

...la/nl/lumc/sasc/biopet/pipelines/flexiprep/SeqtkSeq.scala
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/Sickle.scala 0 additions, 30 deletions

...cala/nl/lumc/sasc/biopet/pipelines/flexiprep/Sickle.scala
flexiprep/src/main/scala/nl/lumc/sasc/biopet/pipelines/flexiprep/scripts/Seqstat.scala 1 addition, 17 deletions

...umc/sasc/biopet/pipelines/flexiprep/scripts/Seqstat.scala

with 31 additions and 73 deletions

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