- Mar 07, 2016
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Sander Bollen authored
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- Mar 04, 2016
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Wai Yi Leung authored
Added function dataprovider This is my dataprovider for this test. If you have quotations, please let me know. See merge request !339
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- Mar 03, 2016
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Peter van 't Hof authored
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Sander Bollen authored
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Sander Bollen authored
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- Mar 02, 2016
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Sander Bollen authored
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- Feb 26, 2016
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Sander Bollen authored
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- Feb 25, 2016
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Sander Bollen authored
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- Feb 24, 2016
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Sander Bollen authored
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- Feb 23, 2016
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Peter van 't Hof authored
Adding the pindel wrapper to the extensions. Updated to support v0.2.5b8 Adding the pindel wrapper Updates: - [x] Pindel wrapper update to support version v0.2.5b8 - [x] Adding tool to create pindel-config (aka bam list for pindel) - [x] VCF output for pindel (using the pindel2vcf) - [x] Insertsize estimation tool (not using bammetrics, is done in mapping pipeline, but not accesible from shivasvcalling->pindel) Closes #240 Closes #263 See merge request !304
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Wai Yi Leung authored
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Wai Yi Leung authored
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- Feb 22, 2016
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Wai Yi Leung authored
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Wai Yi Leung authored
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Wai Yi Leung authored
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Wai Yi Leung authored
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Wai Yi Leung authored
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Wai Yi Leung authored
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Wai Yi Leung authored
Feature sv unit tests This is some basic unit testing for sv calling @wyleung can merge this and then add pindel on that other branch to this? See merge request !323
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
Add some more to the test to vcf filter Fixes #273 See merge request !324
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- Feb 21, 2016
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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- Feb 17, 2016
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Wai Yi Leung authored
New tool to validate if paired end sequences are in sync The tools has been checked with 4 different fastq files and with randomly removing one line. In all cases the tool did what it is supposed to do. Probably some extra features might be build in, but that comes later. See merge request !317
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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- Feb 16, 2016
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Sander van der Zeeuw authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Peter van 't Hof authored
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Sander Bollen authored
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