Commits · c36fb267c18ab842ba968c58fe4b742b5e84f216 · Mirrors / biopet.biopet

18 Aug, 2014 6 commits
- Spelling fix · c36fb267
  Peter van 't Hof authored Aug 18, 2014
  
  c36fb267
- Changes actions for BedToIntervals tests · 3dbf492f
  Peter van 't Hof authored Aug 18, 2014
  
  3dbf492f
- Changed run to library · 7892b57c
  Peter van 't Hof authored Aug 18, 2014
  
  7892b57c
- Removed the Gatk-Old from the pom.xml · eac4ec9e
  Peter van 't Hof authored Aug 18, 2014
  
  eac4ec9e
- Changed Int to Long · 610b8971
  Peter van 't Hof authored Aug 18, 2014
  
  610b8971
- Fix bug on VariantEval -L option · 661c7456
  Peter van 't Hof authored Aug 18, 2014
  
  661c7456
15 Aug, 2014 2 commits
- Added a default vmem · 1f80f95b
  Peter van 't Hof authored Aug 15, 2014
  
  1f80f95b
- Skipping lines that are not correct bed entry's · a5876f3f
  Peter van 't Hof authored Aug 15, 2014
  
  a5876f3f
14 Aug, 2014 5 commits
- Added targetBed option · d8056e3d
  Peter van 't Hof authored Aug 14, 2014
  
  d8056e3d
- Added Vcf sample compare module · d94892dd
  Peter van 't Hof authored Aug 14, 2014
  
  d94892dd
- Added targetBait config option · 7729a31b
  Peter van 't Hof authored Aug 14, 2014
  
  7729a31b
- Fix array on json file · 0683782a
  Peter van 't Hof authored Aug 14, 2014
  
  0683782a
- Fix on end files on flexiprep, not intermediate anymore · 9d40cb55
  Peter van 't Hof authored Aug 14, 2014
  
  9d40cb55
12 Aug, 2014 6 commits
- Added md5sums for excutebles · de30ed59
  Peter van 't Hof authored Aug 12, 2014
  
  de30ed59
- Fix class name for report · 9ff06b99
  Peter van 't Hof authored Aug 12, 2014
  
  9ff06b99
- Fastqc now compatible to version 0.11.2 · ee8bfca5
  Peter van 't Hof authored Aug 12, 2014
  
  ee8bfca5
- Fix compile errors · c5f4ca8b
  Peter van 't Hof authored Aug 12, 2014
  
  c5f4ca8b
- Added Float option · 038301cc
  Peter van 't Hof authored Aug 12, 2014
  
  038301cc
- Merge commit 'dd952f2e ' · 27f6c1a4
  Peter van 't Hof authored Aug 12, 2014
  
  27f6c1a4
11 Aug, 2014 20 commits
- Add unit tests to Ln extension · dd952f2e
  bow authored Aug 11, 2014
  
  dd952f2e
- Add initial cufflinks wrapper · 58f89857
  bow authored Aug 08, 2014
  
  58f89857
- Update Sha1sum documentation · ceee380c
  bow authored Aug 08, 2014
  
  ceee380c
- Removed unused imports · 48524cb0
  Peter van 't Hof authored Aug 11, 2014
  
  48524cb0
- Merge commit 'fa3bbb63 ' into peter · b43fa492
  Peter van 't Hof authored Aug 11, 2014
  
  b43fa492
- Relative path calculation fix · fa3bbb63
  bow authored Aug 11, 2014
  
  fa3bbb63
- Fix name on summary · 72e950b6
  Peter van 't Hof authored Aug 11, 2014
  
  72e950b6
- Move init jobs for flexiprep out of chunks · e294fd51
  Peter van 't Hof authored Aug 11, 2014
  
  e294fd51
- Output of flexiprep is now a zipped file · d26a67ab
  Peter van 't Hof authored Aug 11, 2014
  
  d26a67ab
- Added deps to constructor · 244ca457
  Peter van 't Hof authored Aug 11, 2014
  
  244ca457
- Added gzip · aa2484da
  Peter van 't Hof authored Aug 11, 2014
  
  aa2484da
- Style change · 0fa04b02
  Peter van 't Hof authored Aug 11, 2014
  
  0fa04b02
- Switch to md5sum · 41fa137b
  Peter van 't Hof authored Aug 11, 2014
  
  41fa137b
- Added md5sum · b94b634c
  Peter van 't Hof authored Aug 11, 2014
  
  b94b634c
- Changed output filename · a4fd9bb0
  Peter van 't Hof authored Aug 11, 2014
  
  a4fd9bb0
- Removed unused scripts · 72985a2d
  Peter van 't Hof authored Aug 11, 2014
  
  72985a2d
- Changed referenceFile to reference · b0cd998e
  Peter van 't Hof authored Aug 11, 2014
  
  b0cd998e
- Added numberchunks option for config/commandline · 15a605f9
  Peter van 't Hof authored Aug 11, 2014
  
  15a605f9
- Remove fixed flush · 73a4b2f3
  Peter van 't Hof authored Aug 11, 2014
  
  73a4b2f3
- Fixed flexiprep summary compile bug · fbd0bcdf
  Peter van 't Hof authored Aug 11, 2014
  
  fbd0bcdf
08 Aug, 2014 1 commit
- Removed skipsummary option · daf02820
  Peter van 't Hof authored Aug 08, 2014
  
  daf02820