Fixed flexiprep summary compile bug

fbd0bcdf · Peter van 't Hof · daf02820 · fbd0bcdf
Commit fbd0bcdf authored Aug 11, 2014 by Peter van 't Hof
--- a/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
+++ b/mapping/src/main/scala/nl/lumc/sasc/biopet/pipelines/mapping/Mapping.scala
@@ -159,7 +159,6 @@ class Mapping(val root: Configurable) extends QScript with BiopetQScript {
      if (!skipFlexiprep) {
        flexiprep.input_R1 = fastq_R1
        if (paired) flexiprep.input_R2 = fastq_R2
-        if (chunking) flexiprep.skipSummary = true
        flexiprep.sampleName = this.RGSM
        flexiprep.libraryName = this.RGLB
        flexiprep.init