Commits · 9002b6ce09b1d31a19816fffb84af2ffdb611087 · Mirrors / biopet.biopet

Oct 29, 2015
- Added reference to bamMetrics · 6ac2ce38
  Peter van 't Hof authored 9 years ago
  
  6ac2ce38
Oct 27, 2015
- Change titles · 99a3ba0a
  Peter van 't Hof authored 9 years ago
  
  99a3ba0a
- Switch -a and -b for bedtools coverage · e27c05d0
  Peter van 't Hof authored 9 years ago
  
  e27c05d0
Oct 21, 2015
- Fix unit testing · 4e87ca4c
  Peter van 't Hof authored 9 years ago
  
  4e87ca4c
Oct 20, 2015
- More piping for target flagstat · bf6c2be4
  Peter van 't Hof authored 9 years ago
  
  bf6c2be4
- Use normal pipes instead of fifo pipes · 5421af11
  Peter van 't Hof authored 9 years ago
  
  5421af11
- Remove fixme · 72de7b9d
  Peter van 't Hof authored 9 years ago
  
  72de7b9d
- Added piping support to coverage script · 03df7987
  Peter van 't Hof authored 9 years ago
  
  03df7987
Sep 18, 2015
- Fixed unit tests · 6c7f4701
  Peter van 't Hof authored 9 years ago
  
  6c7f4701
- Fixed case class · bd6eae2c
  Peter van 't Hof authored 9 years ago
  
  bd6eae2c
- Add input files to pipelines · 4875e508
  Peter van 't Hof authored 9 years ago
  
  4875e508
Sep 17, 2015
- Fix plots for library level · c7b0392c
  Peter van 't Hof authored 9 years ago
  
  c7b0392c
- Fix sample bamMetrics · 2d950663
  Peter van 't Hof authored 9 years ago
  
  2d950663
Sep 13, 2015
- Move scripts to bammetrics · eceac8c1
  Peter van 't Hof authored 9 years ago
  
  eceac8c1
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored 9 years ago
  
  f3343df9
- Rscript usable without core now · 7d112c68
  Peter van 't Hof authored 9 years ago
  
  7d112c68
Sep 11, 2015
- Tools split into new modules, core and utils are compileable now · eb97957f
  Peter van 't Hof authored 9 years ago
  
  eb97957f
Sep 10, 2015
- Moved config to utils · a81bce67
  Peter van 't Hof authored 9 years ago
  
  a81bce67
Sep 04, 2015
- Changing to SNAPSHOT version, this is following the maven convention · f550b637
  Peter van 't Hof authored 9 years ago
  
  f550b637
Jul 30, 2015
- Bumb version to 0.5.0-DEV · c3b83b90
  Peter van 't Hof authored 9 years ago
  
  c3b83b90
- Bumb version to 0.4.0 · 6186881d
  Peter van 't Hof authored 9 years ago
  
  6186881d
Jul 28, 2015
- Bumb version to 0.4.0-RC2 · d5834cba
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC2 v0.4.0-RC2
  
  d5834cba
Jul 27, 2015
- Bumb version 0.4.0-RC1 · 5224df5b
  Peter van 't Hof authored 9 years ago
  
  View commits for tag v0.4.0-RC1 v0.4.0-RC1
  
  5224df5b
- Adding license · bcc9debe
  Peter van 't Hof authored 9 years ago
  
  bcc9debe
Jul 03, 2015
- Fix code style warnings · c7b928d3
  Peter van 't Hof authored 9 years ago
  
  c7b928d3
- Fix code style warnings · 2c323f38
  Peter van 't Hof authored 9 years ago
  
  2c323f38
- Fix code style warnings · a3af8046
  Peter van 't Hof authored 9 years ago
  
  a3af8046
Jul 02, 2015
- https is working now, revert the change but keep the new layout and abbr tag.... · 82e665b3
  Wai Yi Leung authored 9 years ago
  82e665b3
- https is working now, revert the change but keep the new layout and abbr tag. · a83bb91e
  Wai Yi Leung authored 9 years ago
  
  a83bb91e
- Fix the link to sasc.lumc.nl (don't point to the https version, redirect is... · 96c79ed5
  Wai Yi Leung authored 9 years ago
  96c79ed5
Jul 01, 2015
- Optimize imports · 9812237c
  Peter van 't Hof authored 9 years ago
  
  9812237c
- Front page texts for report · 8282c888
  Sander Bollen authored 9 years ago
  
  8282c888
Jun 29, 2015
- Changes method name · 2ce81c48
  Peter van 't Hof authored 9 years ago
  
  2ce81c48
Jun 28, 2015
- Update BamMetrics RNA mode and its tests · 5301853f
  bow authored 9 years ago
  
  5301853f
Jun 26, 2015
- insert size messages · 3fe23d90
  Sander Bollen authored 9 years ago
  
  3fe23d90
- Initial Gentrap update to use new Metrics module · d6acc80f
  bow authored 9 years ago
  
  d6acc80f
- proper alignment summaries · 3ca1e994
  Sander Bollen authored 9 years ago
  
  3ca1e994
Jun 25, 2015
- Bump version to 0.3.2 · b77d7b4c
  bow authored 9 years ago
  
  View commits for tag v0.3.2 v0.3.2
  
  b77d7b4c
- Code style · f547c7f2
  Peter van 't Hof authored 9 years ago
  
  f547c7f2
Jun 24, 2015
- Added bammetrics report to pipeline · 16f4925a
  Peter van 't Hof authored 9 years ago
  
  16f4925a