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Commit f547c7f2 authored by Peter van 't Hof's avatar Peter van 't Hof
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Code style

parent 16f4925a
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Showing with 3 additions and 3 deletions
public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
View file @ f547c7f2
......@@ -63,7 +63,7 @@ class BamMetrics(val root: Configurable) extends QScript with SummaryQScript wit
bammetricsReport.args = if (libId.isDefined) Map(
"sampleId" -> sampleId.getOrElse("."),
"libId" -> libId.getOrElse("."))
else Map("sampleId" -> sampleId.getOrElse("."))
else Map("sampleId" -> sampleId.getOrElse("."))
Some(bammetricsReport)
}
......
public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BammetricsReport.scala
View file @ f547c7f2
......@@ -3,7 +3,7 @@ package nl.lumc.sasc.biopet.pipelines.bammetrics
import java.io.{ PrintWriter, File }
import nl.lumc.sasc.biopet.core.config.Configurable
import nl.lumc.sasc.biopet.core.report.{ReportBuilderExtension, ReportBuilder, ReportPage, ReportSection}
import nl.lumc.sasc.biopet.core.report.{ ReportBuilderExtension, ReportBuilder, ReportPage, ReportSection }
import nl.lumc.sasc.biopet.core.summary.{ SummaryValue, Summary }
import nl.lumc.sasc.biopet.extensions.rscript.{ XYPlot, StackedBarPlot }
......@@ -25,7 +25,7 @@ object BammetricsReport extends ReportBuilder {
ReportPage(bamMetricsPage.subPages ::: List(
"Versions" -> ReportPage(List(), List((
"Executables" -> ReportSection("/nl/lumc/sasc/biopet/core/report/executables.ssp"
))), Map()),
))), Map()),
"Files" -> ReportPage(List(), List(
"Input fastq files" -> ReportSection("/nl/lumc/sasc/biopet/pipelines/bammetrics/bammetricsInputFile.ssp")
), Map())
......
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