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Initial Gentrap update to use new Metrics module
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- public/bammetrics/src/main/scala/nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala 7 additions, 2 deletions...nl/lumc/sasc/biopet/pipelines/bammetrics/BamMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectMultipleMetrics.scala 12 additions, 4 deletions...asc/biopet/extensions/picard/CollectMultipleMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/extensions/picard/CollectRnaSeqMetrics.scala 2 additions, 1 deletion.../sasc/biopet/extensions/picard/CollectRnaSeqMetrics.scala
- public/biopet-framework/src/main/scala/nl/lumc/sasc/biopet/tools/MergeTables.scala 2 additions, 2 deletions...rc/main/scala/nl/lumc/sasc/biopet/tools/MergeTables.scala
- public/gentrap/src/main/resources/nl/lumc/sasc/biopet/pipelines/gentrap/scripts/pdf_report.py 64 additions, 58 deletions.../lumc/sasc/biopet/pipelines/gentrap/scripts/pdf_report.py
- public/gentrap/src/main/resources/nl/lumc/sasc/biopet/pipelines/gentrap/templates/pdf/lib_mapping.tex 2 additions, 11 deletions...sc/biopet/pipelines/gentrap/templates/pdf/lib_mapping.tex
- public/gentrap/src/main/scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala 34 additions, 41 deletions...scala/nl/lumc/sasc/biopet/pipelines/gentrap/Gentrap.scala
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