Commits · 7d201c9d53ee634ad95266b1a140b4f6629bd292 · Mirrors / biopet.biopet

May 06, 2016
- Adding logging · 7d201c9d
  Peter van 't Hof authored 8 years ago
  
  7d201c9d
- Skip checks when running on an empty vcf file · d530c5f7
  Peter van 't Hof authored 8 years ago
  
  d530c5f7
- Correct tests · e2c9fe3a
  Peter van 't Hof authored 8 years ago
  
  e2c9fe3a
- Add option to disable scattering · 605a588e
  Peter van 't Hof authored 8 years ago
  
  605a588e
- Replace VEP with zcat when no variants in vcf file · 769e3c84
  Peter van 't Hof authored 8 years ago
  
  769e3c84
- Update catvariants · 76992696
  Peter van 't Hof authored 8 years ago
  
  76992696
- Fix compile errors · 556ca42a
  Peter van 't Hof authored 8 years ago
  
  556ca42a
- Merge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotation · a09badf6
  Peter van 't Hof authored 8 years ago
  
  a09badf6
- Added mkdirs · 42b78af4
  Peter van 't Hof authored 8 years ago
  
  42b78af4
May 05, 2016
- Merge branch 'fix-gatk_extension_cleanup' into 'develop' · 9e3d9653
  bow authored 8 years ago
  
  Fix gatk extension cleanup Fixes #336 See merge request !390
  9e3d9653
- Fixed region selectvariants · afd60c92
  Peter van 't Hof authored 8 years ago
  
  afd60c92
- Fixed implicit class · 1d64d452
  Peter van 't Hof authored 8 years ago
  
  1d64d452
- Merge branch 'fix-vcftovcf' into feature-scatter_annotation · 03a64bc3
  Peter van 't Hof authored 8 years ago
  
  03a64bc3
- Code improvement · acd074bd
  Peter van 't Hof authored 8 years ago
  
  acd074bd
- Added scala docs · 53d43e76
  Peter van 't Hof authored 8 years ago
  
  53d43e76
- Relax the reference check · 5f91fed6
  Peter van 't Hof authored 8 years ago
  
  5f91fed6
May 04, 2016
- Style changes · 94f9d6bd
  Peter van 't Hof authored 8 years ago
  
  94f9d6bd
- Merge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotation · bdaab956
  Peter van 't Hof authored 8 years ago
  
  # Conflicts: # toucan/src/main/scala/nl/lumc/sasc/biopet/pipelines/toucan/Toucan.scala
  bdaab956
- Merge remote-tracking branch 'remotes/origin/develop' into fix-gatk_extension_cleanup · 748fe576
  Peter van 't Hof authored 8 years ago
  
  748fe576
- Move package · f2e835df
  Peter van 't Hof authored 8 years ago
  
  f2e835df
- Merge branch 'toucan-groups' into 'develop' · 766d624d
  Peter van 't Hof authored 8 years ago
  
  Toucan groups Fixes #315 and adds some for #324 See merge request !385
  766d624d
- Remove duplicated extensions · 14f35a60
  Peter van 't Hof authored 8 years ago
  
  14f35a60
- Remove unused trait · bf514e93
  Peter van 't Hof authored 8 years ago
  
  bf514e93
- Merge branch 'develop' into toucan-groups · e0c54cc7
  Sander Bollen authored 8 years ago
  
  e0c54cc7
- Merge branch 'feature-grep' into 'develop' · ff0d656a
  bow authored 8 years ago
  
  Added grep as extension See merge request !388
  ff0d656a
- Added grep as extension · 799130b4
  Peter van 't Hof authored 8 years ago
  
  799130b4
- Added fake exe · 819de8e1
  Peter van 't Hof authored 8 years ago
  
  819de8e1
- Moved files · ad944730
  Peter van 't Hof authored 8 years ago
  
  ad944730
- Merge remote-tracking branch 'remotes/origin/develop' into toucan-groups · 2064a3a4
  Peter van 't Hof authored 8 years ago
  
  2064a3a4
- Merge remote-tracking branch 'remotes/origin/develop' into feature-scatter_annotation · 72f6068a
  Peter van 't Hof authored 8 years ago
  
  # Conflicts: # biopet-tools-extensions/src/test/scala/nl/lumc/sasc/biopet/extensions/tools/VcfFilterTest.scala # public/biopet-tools-extensions/src/test/scala/VcfFilterTest.scala # public/biopet-tools-extensions/src/test/scala/nl/lumc/sasc/biopet/extensions/tools/VcfFilterTest.scala
  72f6068a
- Merge branch 'feature-queue_licence' into 'develop' · e0721bc5
  bow authored 8 years ago
  
  Added exclusion for gatk tools This is related to #332 See merge request !382
  e0721bc5
- Change name of main object · 7fe6e999
  Peter van 't Hof authored 8 years ago
  
  7fe6e999
- Added allele index to deps · 6f001daf
  Peter van 't Hof authored 8 years ago
  
  6f001daf
- Correct imports · 26fa9924
  Peter van 't Hof authored 8 years ago
  
  26fa9924
- Add deprication tag · a0573985
  Peter van 't Hof authored 8 years ago
  
  a0573985
- Remove old licence from header · 502bfac1
  Peter van 't Hof authored 8 years ago
  
  502bfac1
- Fixed graph issue · 613e1195
  Peter van 't Hof authored 8 years ago
  
  613e1195
May 03, 2016
- Fixed outputFiles of fifo pipe · cf5683e9
  Peter van 't Hof authored 8 years ago
  
  cf5683e9
- Fixed unit tests · 7c8fe6be
  Peter van 't Hof authored 8 years ago
  
  7c8fe6be
- Move scatter functions to biopet extensions · c3ec3cb9
  Peter van 't Hof authored 8 years ago
  
  c3ec3cb9